Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J50_RS28480 Genome accession   NZ_CP163440
Coordinates   6264088..6265497 (-) Length   469 a.a.
NCBI ID   WP_327430649.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6259088..6270497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS28455 (AB5J50_28455) - 6259153..6259800 (-) 648 WP_327430644.1 hypothetical protein -
  AB5J50_RS28460 (AB5J50_28460) - 6259788..6260339 (-) 552 WP_327430645.1 SigE family RNA polymerase sigma factor -
  AB5J50_RS28465 (AB5J50_28465) - 6260602..6261522 (-) 921 WP_369261080.1 A/G-specific adenine glycosylase -
  AB5J50_RS28470 (AB5J50_28470) - 6261895..6262704 (+) 810 WP_369261081.1 hypothetical protein -
  AB5J50_RS28475 (AB5J50_28475) disA 6262895..6264019 (-) 1125 WP_369261082.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J50_RS28480 (AB5J50_28480) radA/sms 6264088..6265497 (-) 1410 WP_327430649.1 DNA repair protein RadA Machinery gene
  AB5J50_RS28485 (AB5J50_28485) - 6265694..6267460 (+) 1767 WP_369261083.1 hypothetical protein -
  AB5J50_RS28490 (AB5J50_28490) - 6267581..6268441 (-) 861 WP_327430651.1 hypothetical protein -
  AB5J50_RS28495 (AB5J50_28495) - 6268513..6269445 (+) 933 WP_327430652.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49785.98 Da        Isoelectric Point: 8.0022

>NTDB_id=925357 AB5J50_RS28480 WP_327430649.1 6264088..6265497(-) (radA/sms) [Streptomyces sp. R35]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=925357 AB5J50_RS28480 WP_327430649.1 6264088..6265497(-) (radA/sms) [Streptomyces sp. R35]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACGACTCCGGGCC
GCGTCACCACCTCCGCGGTGCCCATCGGGCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTGCCCGGCGCGGTCGTCCTGGTCGCGGGCGAGCCGGGGGTCGGCAAGTCCACGCT
CCTCCTCGACGTGGCGGCCAAGTCGGCCAGCGACGAGCACCGCACGCTGTATGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGCCTCCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTGGCCGCCGAAACCGACCTGGCCGCCGTCCTC
GGCCACCTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTGCAGACGGTCGCCTCCCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCCCTCATCCGCGCCTCCAAGGACCGTGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACATCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTGGTCCGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCACAGATC
CCCTCCCCCCGTCGTACGACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGGCCG
GATCACCGCCCTCGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCAGCGGACCTCG
CGATCGCACTCGCCCTCGCCTCCGCGGCGAGCGACACCCCGCTCCCCAAAAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTCCAGCGCCGGCTCGCCGAAGCCCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGACCGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCCTCC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409