Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | Llc71_RS11960 | Genome accession | NZ_AP025520 |
| Coordinates | 2333397..2333666 (-) | Length | 89 a.a. |
| NCBI ID | WP_042748573.1 | Uniprot ID | A0A084A9I1 |
| Organism | Lactococcus cremoris strain 7-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2328397..2338666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Llc71_RS11920 (Llc71_23800) | - | 2328931..2329740 (-) | 810 | WP_011677177.1 | metal ABC transporter permease | - |
| Llc71_RS11925 (Llc71_23810) | - | 2329733..2330470 (-) | 738 | WP_011836039.1 | metal ABC transporter ATP-binding protein | - |
| Llc71_RS11930 (Llc71_23820) | - | 2330649..2331491 (-) | 843 | WP_011677179.1 | zinc ABC transporter substrate-binding protein | - |
| Llc71_RS11935 (Llc71_23830) | - | 2331488..2331925 (-) | 438 | WP_011836041.1 | zinc-dependent MarR family transcriptional regulator | - |
| Llc71_RS11940 (Llc71_23840) | comGG | 2332006..2332305 (-) | 300 | WP_011836042.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| Llc71_RS11945 (Llc71_23860) | comGF | 2332329..2332775 (-) | 447 | WP_011836043.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| Llc71_RS11950 (Llc71_23870) | comGE | 2332738..2333034 (-) | 297 | WP_248536738.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| Llc71_RS11955 (Llc71_23880) | comGD | 2333006..2333437 (-) | 432 | WP_052719845.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| Llc71_RS11960 (Llc71_23890) | comGC | 2333397..2333666 (-) | 270 | WP_042748573.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| Llc71_RS11970 (Llc71_23900) | - | 2334592..2335029 (-) | 438 | WP_248536995.1 | DUF2335 domain-containing protein | - |
| Llc71_RS11975 (Llc71_23910) | - | 2335019..2335246 (-) | 228 | WP_058225013.1 | hypothetical protein | - |
| Llc71_RS11980 (Llc71_23920) | - | 2335393..2336172 (-) | 780 | WP_248536739.1 | peptidoglycan amidohydrolase family protein | - |
| Llc71_RS11985 (Llc71_23930) | - | 2336172..2336459 (-) | 288 | WP_023164507.1 | phage holin | - |
| Llc71_RS11990 (Llc71_23940) | - | 2336471..2336821 (-) | 351 | WP_248536740.1 | hypothetical protein | - |
| Llc71_RS11995 (Llc71_23950) | - | 2336834..2337070 (-) | 237 | WP_248536741.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10110.57 Da Isoelectric Point: 4.4079
>NTDB_id=92529 Llc71_RS11960 WP_042748573.1 2333397..2333666(-) (comGC) [Lactococcus cremoris strain 7-1]
MLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDNDKPNLSELLSAGMITKKQVTAYDDYYDQN
KNEQRNFDD
MLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDNDKPNLSELLSAGMITKKQVTAYDDYYDQN
KNEQRNFDD
Nucleotide
Download Length: 270 bp
>NTDB_id=92529 Llc71_RS11960 WP_042748573.1 2333397..2333666(-) (comGC) [Lactococcus cremoris strain 7-1]
ATGTTAATTGTGTTGGCAATTATCAGTATTTTAATTTTGCTTTTTGTGCCAAATTTGATAAAAGAAAAAGCACAAGTTCA
AAAAACTGGTGAAGCAGCAGTAGTTAAAGTAGTTGAAAGTCAGGCACAACTTTATGAGTTGGATCATGATAATGATAAGC
CAAACCTATCAGAACTTTTAAGTGCGGGGATGATTACGAAAAAGCAAGTCACGGCCTATGATGATTACTATGACCAGAAT
AAAAATGAACAGCGCAATTTCGATGATTAG
ATGTTAATTGTGTTGGCAATTATCAGTATTTTAATTTTGCTTTTTGTGCCAAATTTGATAAAAGAAAAAGCACAAGTTCA
AAAAACTGGTGAAGCAGCAGTAGTTAAAGTAGTTGAAAGTCAGGCACAACTTTATGAGTTGGATCATGATAATGATAAGC
CAAACCTATCAGAACTTTTAAGTGCGGGGATGATTACGAAAAAGCAAGTCACGGCCTATGATGATTACTATGACCAGAAT
AAAAATGAACAGCGCAATTTCGATGATTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Lactococcus lactis subsp. cremoris KW2 |
98.876 |
100 |
0.989 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
57.647 |
95.506 |
0.551 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
52.809 |
100 |
0.528 |
| comGC/cglC | Streptococcus pneumoniae D39 |
52.809 |
100 |
0.528 |
| comGC/cglC | Streptococcus pneumoniae R6 |
52.809 |
100 |
0.528 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
52.809 |
100 |
0.528 |
| comYC | Streptococcus suis isolate S10 |
57.534 |
82.022 |
0.472 |
| comGC/cglC | Streptococcus mitis SK321 |
52.632 |
85.393 |
0.449 |
| comYC | Streptococcus mutans UA140 |
52.055 |
82.022 |
0.427 |
| comYC | Streptococcus mutans UA159 |
52.055 |
82.022 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
52.113 |
79.775 |
0.416 |