Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Llc71_RS11955 Genome accession   NZ_AP025520
Coordinates   2333006..2333437 (-) Length   143 a.a.
NCBI ID   WP_052719845.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 7-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2328006..2338437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Llc71_RS11915 (Llc71_23790) - 2328037..2328909 (+) 873 WP_011836037.1 RluA family pseudouridine synthase -
  Llc71_RS11920 (Llc71_23800) - 2328931..2329740 (-) 810 WP_011677177.1 metal ABC transporter permease -
  Llc71_RS11925 (Llc71_23810) - 2329733..2330470 (-) 738 WP_011836039.1 metal ABC transporter ATP-binding protein -
  Llc71_RS11930 (Llc71_23820) - 2330649..2331491 (-) 843 WP_011677179.1 zinc ABC transporter substrate-binding protein -
  Llc71_RS11935 (Llc71_23830) - 2331488..2331925 (-) 438 WP_011836041.1 zinc-dependent MarR family transcriptional regulator -
  Llc71_RS11940 (Llc71_23840) comGG 2332006..2332305 (-) 300 WP_011836042.1 competence type IV pilus minor pilin ComGG Machinery gene
  Llc71_RS11945 (Llc71_23860) comGF 2332329..2332775 (-) 447 WP_011836043.1 competence type IV pilus minor pilin ComGF Machinery gene
  Llc71_RS11950 (Llc71_23870) comGE 2332738..2333034 (-) 297 WP_248536738.1 competence type IV pilus minor pilin ComGE Machinery gene
  Llc71_RS11955 (Llc71_23880) comGD 2333006..2333437 (-) 432 WP_052719845.1 competence type IV pilus minor pilin ComGD Machinery gene
  Llc71_RS11960 (Llc71_23890) comGC 2333397..2333666 (-) 270 WP_042748573.1 competence type IV pilus major pilin ComGC Machinery gene
  Llc71_RS11970 (Llc71_23900) - 2334592..2335029 (-) 438 WP_248536995.1 DUF2335 domain-containing protein -
  Llc71_RS11975 (Llc71_23910) - 2335019..2335246 (-) 228 WP_058225013.1 hypothetical protein -
  Llc71_RS11980 (Llc71_23920) - 2335393..2336172 (-) 780 WP_248536739.1 peptidoglycan amidohydrolase family protein -
  Llc71_RS11985 (Llc71_23930) - 2336172..2336459 (-) 288 WP_023164507.1 phage holin -
  Llc71_RS11990 (Llc71_23940) - 2336471..2336821 (-) 351 WP_248536740.1 hypothetical protein -
  Llc71_RS11995 (Llc71_23950) - 2336834..2337070 (-) 237 WP_248536741.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16603.45 Da        Isoelectric Point: 8.3145

>NTDB_id=92528 Llc71_RS11955 WP_052719845.1 2333006..2333437(-) (comGD) [Lactococcus cremoris strain 7-1]
MTRIKMNSAISMIRAFTLLESLLVLLIVSFITLFFSAELTQTVHLFKGELFVLQFENLYKISQENAALQSSSENLESKNG
KLIYENKEIDIPKEVEMAEFLIKFDEKGENSSLQKIKVYLPYEKKTILYQMEMGSGKYKKRIN

Nucleotide


Download         Length: 432 bp        

>NTDB_id=92528 Llc71_RS11955 WP_052719845.1 2333006..2333437(-) (comGD) [Lactococcus cremoris strain 7-1]
ATGACCAGAATAAAAATGAACAGCGCAATTTCGATGATTAGAGCCTTCACATTGTTAGAATCTCTACTGGTATTACTTAT
TGTCTCTTTTATCACCCTCTTTTTCTCAGCAGAATTGACTCAAACAGTGCATTTATTTAAGGGAGAACTCTTTGTCTTAC
AGTTCGAAAATTTATACAAAATAAGTCAGGAGAATGCAGCGCTACAAAGTAGTTCAGAAAATTTAGAAAGTAAAAATGGG
AAATTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTAAATTTGATGAGAA
AGGGGAGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGG
GGAGTGGAAAATATAAAAAGAGAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

97.203

100

0.972
  comYD Streptococcus mutans UA140

39.394

92.308

0.364
  comYD Streptococcus mutans UA159

39.394

92.308

0.364

Multiple sequence alignment