Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU50_RS14240 Genome accession   NZ_AP025514
Coordinates   3120453..3121565 (-) Length   370 a.a.
NCBI ID   WP_060468893.1    Uniprot ID   A0A109D6S1
Organism   Vibrio toranzoniae strain CECT 7225     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3115453..3126565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS14210 hemF 3115992..3116909 (-) 918 WP_060468889.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU50_RS14215 - 3116929..3117486 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  OCU50_RS14220 purE 3117682..3118167 (+) 486 WP_017073863.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU50_RS14225 - 3118173..3119303 (+) 1131 WP_060468890.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU50_RS14230 - 3119392..3119961 (-) 570 WP_060468891.1 type I DNA topoisomerase -
  OCU50_RS14235 - 3119974..3120450 (-) 477 WP_060468892.1 DUF494 family protein -
  OCU50_RS14240 dprA 3120453..3121565 (-) 1113 WP_060468893.1 DNA-processing protein DprA Machinery gene
  OCU50_RS14245 - 3121562..3122668 (-) 1107 WP_060468894.1 LysM peptidoglycan-binding domain-containing protein -
  OCU50_RS14250 def 3122809..3123321 (+) 513 WP_004735769.1 peptide deformylase -
  OCU50_RS14255 fmt 3123360..3124325 (+) 966 WP_060468895.1 methionyl-tRNA formyltransferase -
  OCU50_RS14260 rsmB 3124446..3125726 (+) 1281 WP_060468896.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40127.86 Da        Isoelectric Point: 6.7663

>NTDB_id=92426 OCU50_RS14240 WP_060468893.1 3120453..3121565(-) (dprA) [Vibrio toranzoniae strain CECT 7225]
MNEQQLSAWLTLSFIPQLGGKRLSRLLSIDSPSNIVDYSSQQLQAIGLSAKQISYLREQAPREVEACLVWQAKQTNHRII
TPNCSNYPKLLNEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICESGALISEFRPNAKPRPEHFPRRNRIISGMSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLDLELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92426 OCU50_RS14240 WP_060468893.1 3120453..3121565(-) (dprA) [Vibrio toranzoniae strain CECT 7225]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTGAGTTTTATTCCTCAATTGGGTGGCAAGCGCCTTTCTCGTCTGCT
GAGTATTGACTCTCCTTCTAATATTGTTGACTACTCAAGTCAGCAGCTGCAAGCGATTGGCTTGTCAGCTAAGCAAATCT
CCTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGTATGGCAAGCAAAACAAACTAACCATCGCATCATT
ACTCCTAACTGCTCGAATTATCCCAAACTGCTGAATGAGATCGCCTCTGCGCCAAGCGTGCTTTTCGTTAAAGGTCATGT
TGAAAAACTGATTGAGCCTCAAATTGCGATGGTCGGCAGTCGTAATGCCAGCCTCGAAGGGTTGCAAACCGCGAAGTCCT
TTGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCCTAGCGCTCGGTATTGACGGCTATGCTCATGATGGT
GCTTTGGACAAAGGTGGGGAAACCTTTGCAGTGTTGGGTTCTGGCCTGGACTCCATTTATCCAGCACGACACCGAAACCT
AGCAGATAGAATTTGTGAGAGTGGCGCACTGATCTCAGAGTTTCGCCCAAACGCAAAACCACGACCTGAACATTTCCCTC
GGCGTAACCGTATTATTAGTGGGATGTCTTTAGGGACGTTAGTTGTTGAGGCGGCTGAGAAAAGCGGTTCTTTGATTACG
GCTCGTTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCAATTCATAGCCCAACCAGCCGCGGAGGTAA
CAGTCTCATCAAAGCTGGAGCATGTTTGGTACAGAGTGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CCATTGATCAGCAGCCCAGTTTGTTCGAACCTACGCCGAATGAGGGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAAGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGATCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D6S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

66.667

99.73

0.665
  dprA Vibrio cholerae strain A1552

57.754

100

0.584
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.473
  dprA Neisseria meningitidis MC58

37.531

100

0.403
  dprA Neisseria meningitidis strain C311

37.531

100

0.403
  dprA Haemophilus influenzae Rd KW20

43.917

91.081

0.4
  dprA Legionella pneumophila strain ERS1305867

44.817

88.649

0.397
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Acinetobacter baumannii strain A118

40.29

93.243

0.376
  dprA Acinetobacter baumannii D1279779

40.469

92.162

0.373
  dprA Acinetobacter baylyi ADP1

38.617

93.784

0.362

Multiple sequence alignment