Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | OCU50_RS13080 | Genome accession | NZ_AP025514 |
| Coordinates | 2870289..2870807 (-) | Length | 172 a.a. |
| NCBI ID | WP_060468741.1 | Uniprot ID | A0A109D7A3 |
| Organism | Vibrio toranzoniae strain CECT 7225 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2865289..2875807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU50_RS13065 | aroB | 2866729..2867817 (-) | 1089 | WP_060468739.1 | 3-dehydroquinate synthase | - |
| OCU50_RS13070 | aroK | 2867843..2868361 (-) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| OCU50_RS13075 | pilQ | 2868538..2870229 (-) | 1692 | WP_060468740.1 | type IV pilus secretin PilQ | Machinery gene |
| OCU50_RS13080 | pilP | 2870289..2870807 (-) | 519 | WP_060468741.1 | pilus assembly protein PilP | Machinery gene |
| OCU50_RS13085 | pilO | 2870794..2871405 (-) | 612 | WP_060468742.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCU50_RS13090 | pilN | 2871398..2871997 (-) | 600 | WP_060468743.1 | PilN domain-containing protein | Machinery gene |
| OCU50_RS13095 | pilM | 2871981..2873006 (-) | 1026 | WP_060468744.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCU50_RS13100 | - | 2873158..2875719 (+) | 2562 | WP_060468745.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19122.44 Da Isoelectric Point: 10.8582
>NTDB_id=92420 OCU50_RS13080 WP_060468741.1 2870289..2870807(-) (pilP) [Vibrio toranzoniae strain CECT 7225]
MKPNRVFCSTLLLLLLVGCKANEDSLEGFVVQVEAKARKEVEQLVPAAEFTAATYQRRAFRPPFELPKEAIVQNQPLIKK
NCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQHVLINETLPDGLG
CWHKRNVKLALK
MKPNRVFCSTLLLLLLVGCKANEDSLEGFVVQVEAKARKEVEQLVPAAEFTAATYQRRAFRPPFELPKEAIVQNQPLIKK
NCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQHVLINETLPDGLG
CWHKRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=92420 OCU50_RS13080 WP_060468741.1 2870289..2870807(-) (pilP) [Vibrio toranzoniae strain CECT 7225]
ATGAAACCCAATAGAGTGTTCTGTTCAACCTTACTACTGCTTTTGCTTGTGGGCTGTAAAGCGAATGAAGATTCGTTAGA
AGGTTTTGTAGTGCAAGTTGAAGCCAAGGCCAGGAAAGAGGTGGAACAGCTTGTTCCTGCCGCTGAGTTTACGGCTGCTA
CTTATCAACGCCGAGCTTTTCGTCCTCCGTTTGAACTTCCTAAGGAAGCCATTGTGCAGAATCAGCCTCTAATTAAGAAA
AATTGTTGGCAACCTAGTGCTCGCTCTCGGAATGGCAAGCTAGAGAAATACCCGCTGAGTAAGCTTCGTTTAAGAGGCGT
GATGGGAAGTGGCTCAAGCGTGTTTGGATTAGTGCAAACACCCAAAGGGAATGTGGTAAACGTGAAAAAAGGCCAGTTTA
TCGGTTTAAATAACGGTCGTGTTACTAAAGTAACGAGCCAGCACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCACAAGCGCAACGTTAAGCTGGCTCTGAAGTAA
ATGAAACCCAATAGAGTGTTCTGTTCAACCTTACTACTGCTTTTGCTTGTGGGCTGTAAAGCGAATGAAGATTCGTTAGA
AGGTTTTGTAGTGCAAGTTGAAGCCAAGGCCAGGAAAGAGGTGGAACAGCTTGTTCCTGCCGCTGAGTTTACGGCTGCTA
CTTATCAACGCCGAGCTTTTCGTCCTCCGTTTGAACTTCCTAAGGAAGCCATTGTGCAGAATCAGCCTCTAATTAAGAAA
AATTGTTGGCAACCTAGTGCTCGCTCTCGGAATGGCAAGCTAGAGAAATACCCGCTGAGTAAGCTTCGTTTAAGAGGCGT
GATGGGAAGTGGCTCAAGCGTGTTTGGATTAGTGCAAACACCCAAAGGGAATGTGGTAAACGTGAAAAAAGGCCAGTTTA
TCGGTTTAAATAACGGTCGTGTTACTAAAGTAACGAGCCAGCACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCACAAGCGCAACGTTAAGCTGGCTCTGAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
64.375 |
93.023 |
0.599 |
| pilP | Vibrio campbellii strain DS40M4 |
53.254 |
98.256 |
0.523 |