Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV44_RS14190 Genome accession   NZ_AP025510
Coordinates   3178889..3180001 (-) Length   370 a.a.
NCBI ID   WP_139685462.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3173889..3185001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS14160 hemF 3174447..3175364 (-) 918 WP_139685458.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV44_RS14165 - 3175384..3175941 (-) 558 WP_139685459.1 L-threonylcarbamoyladenylate synthase -
  OCV44_RS14170 purE 3176137..3176622 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV44_RS14175 - 3176628..3177758 (+) 1131 WP_139685460.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV44_RS14180 - 3177827..3178396 (-) 570 WP_139685461.1 type I DNA topoisomerase -
  OCV44_RS14185 - 3178409..3178885 (-) 477 WP_009848094.1 DUF494 family protein -
  OCV44_RS14190 dprA 3178889..3180001 (-) 1113 WP_139685462.1 DNA-processing protein DprA Machinery gene
  OCV44_RS14195 - 3179998..3181089 (-) 1092 WP_139685463.1 LysM peptidoglycan-binding domain-containing protein -
  OCV44_RS14200 def 3181230..3181742 (+) 513 WP_004735769.1 peptide deformylase -
  OCV44_RS14205 fmt 3181781..3182746 (+) 966 WP_139685464.1 methionyl-tRNA formyltransferase -
  OCV44_RS14210 rsmB 3182867..3184147 (+) 1281 WP_139685465.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40118.73 Da        Isoelectric Point: 6.7205

>NTDB_id=92381 OCV44_RS14190 WP_139685462.1 3178889..3180001(-) (dprA) [Vibrio tasmaniensis strain LMG 20012]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIAGYSSQQLQALGLSAKQIAYLREQAPRDMETCLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQNAQDVLIEIKSLLDWSIDQQPSLFEPTSNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92381 OCV44_RS14190 WP_139685462.1 3178889..3180001(-) (dprA) [Vibrio tasmaniensis strain LMG 20012]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGTCTGCT
GAGTATTGATTCCCCTTCGAATATTGCTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAGGCCCCAAGAGACATGGAGACTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCTGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCGATGGTTGGTAGTCGTAACGCCAGTCTCGAAGGGCTGCAAACTGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTTGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAGACTTTTGCTGTGTTGGGTTCAGGTTTGGATTCCATTTACCCAGCGCGACACAGAAACTT
AGCCGATAGGATCTGTGAAAATGGCGCATTGATTTCAGAGTTTCGCCCTAGTGCTAAACCTCGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTGTCGCTTGGAACTTTGGTGGTTGAGGCCGCTGAAAAGAGTGGCTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGTTACCAGGCTCTATTCATAGTCCAACCAGCCGTGGCGGCAA
TAGCTTAATTAAAGCTGGTGCATGTTTGGTGCAAAATGCTCAAGATGTTCTGATCGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGTCGAATGAGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.48

99.73

0.673
  dprA Vibrio cholerae strain A1552

57.754

100

0.584
  dprA Glaesserella parasuis strain SC1401

47.312

100

0.476
  dprA Neisseria meningitidis MC58

38.539

100

0.414
  dprA Neisseria meningitidis strain C311

38.539

100

0.414
  dprA Legionella pneumophila strain ERS1305867

46.646

88.649

0.414
  dprA Haemophilus influenzae Rd KW20

44.311

90.27

0.4
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397
  dprA Acinetobacter baumannii strain A118

42.229

92.162

0.389
  dprA Acinetobacter baumannii D1279779

41.813

92.432

0.386
  dprA Acinetobacter baylyi ADP1

40.299

90.541

0.365

Multiple sequence alignment