Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU90_RS17215 Genome accession   NZ_AP025508
Coordinates   3822194..3823306 (-) Length   370 a.a.
NCBI ID   WP_061025227.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3817194..3828306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS17185 hemF 3817734..3818651 (-) 918 WP_061025234.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU90_RS17190 - 3818671..3819228 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  OCU90_RS17195 purE 3819424..3819909 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU90_RS17200 - 3819915..3821045 (+) 1131 WP_061025232.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU90_RS17205 - 3821132..3821701 (-) 570 WP_061025229.1 type I DNA topoisomerase -
  OCU90_RS17210 - 3821714..3822190 (-) 477 WP_004735774.1 DUF494 family protein -
  OCU90_RS17215 dprA 3822194..3823306 (-) 1113 WP_061025227.1 DNA-processing protein DprA Machinery gene
  OCU90_RS17220 - 3823303..3824394 (-) 1092 WP_017080841.1 LysM peptidoglycan-binding domain-containing protein -
  OCU90_RS17225 def 3824535..3825047 (+) 513 WP_004735769.1 peptide deformylase -
  OCU90_RS17230 fmt 3825086..3826051 (+) 966 WP_061025224.1 methionyl-tRNA formyltransferase -
  OCU90_RS17235 rsmB 3826171..3827451 (+) 1281 WP_017077320.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40124.80 Da        Isoelectric Point: 6.7207

>NTDB_id=92332 OCU90_RS17215 WP_061025227.1 3822194..3823306(-) (dprA) [Vibrio splendidus strain LMG 19031]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTSNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92332 OCU90_RS17215 WP_061025227.1 3822194..3823306(-) (dprA) [Vibrio splendidus strain LMG 19031]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCCCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAACGAGACAGCCTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCATGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAATCCT
TCGCCAAAGAGTTTGTGCAAAACGGTTTGATTGTCACGAGTGGCTTAGCCTTAGGCATCGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTCGCGGTGCTGGGCTCTGGATTGGATTCAATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGTGCCAAGCCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGTAA
TAGCTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGACCAACAGCCTAGCTTGTTCGAGCCTACGTCGAATGAGGGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.312

100

0.476
  dprA Legionella pneumophila strain ERS1305867

44.231

98.378

0.435
  dprA Neisseria meningitidis MC58

39.043

100

0.419
  dprA Neisseria meningitidis strain C311

39.043

100

0.419
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Haemophilus influenzae Rd KW20

44.311

90.27

0.4
  dprA Acinetobacter baumannii D1279779

42.073

88.649

0.373
  dprA Acinetobacter baumannii strain A118

42.073

88.649

0.373
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362

Multiple sequence alignment