Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV12_RS15980 Genome accession   NZ_AP025506
Coordinates   3586738..3587850 (-) Length   370 a.a.
NCBI ID   WP_261885040.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3581738..3592850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS15950 hemF 3582260..3583177 (-) 918 WP_261885036.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV12_RS15955 - 3583198..3583755 (-) 558 WP_261885037.1 L-threonylcarbamoyladenylate synthase -
  OCV12_RS15960 purE 3583950..3584435 (+) 486 WP_017073863.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV12_RS15965 - 3584441..3585571 (+) 1131 WP_261885038.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV12_RS15970 - 3585676..3586245 (-) 570 WP_261885039.1 type I DNA topoisomerase -
  OCV12_RS15975 - 3586258..3586734 (-) 477 WP_048657837.1 DUF494 family protein -
  OCV12_RS15980 dprA 3586738..3587850 (-) 1113 WP_261885040.1 DNA-processing protein DprA Machinery gene
  OCV12_RS15985 - 3587847..3588938 (-) 1092 WP_261885041.1 LysM peptidoglycan-binding domain-containing protein -
  OCV12_RS15990 def 3589079..3589591 (+) 513 WP_017058772.1 peptide deformylase -
  OCV12_RS15995 fmt 3589629..3590576 (+) 948 WP_261885042.1 methionyl-tRNA formyltransferase -
  OCV12_RS16000 rsmB 3590668..3591948 (+) 1281 WP_261885043.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40152.92 Da        Isoelectric Point: 7.0524

>NTDB_id=92287 OCV12_RS15980 WP_261885040.1 3586738..3587850(-) (dprA) [Vibrio pomeroyi strain LMG 20537]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQISYLREQAPREVEACLAWQAKQPNHHII
TPNCSHYPKLLNEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDRGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPCAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKVGACLVQNAQDVLIEIKSLLNWSIDQQPSLFEPTQNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92287 OCV12_RS15980 WP_261885040.1 3586738..3587850(-) (dprA) [Vibrio pomeroyi strain LMG 20537]
GTGAATGAGCAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAACGTCTCTCTCGCCTGCT
GAGTATCGATTCCCCTTCGAACATAGTTGGCTACTCAAGTCAGCAGCTGCAAGCTATCGGTTTGTCAGCCAAGCAAATTT
CTTATCTTAGAGAGCAAGCCCCACGAGAAGTGGAGGCTTGCTTAGCATGGCAAGCAAAACAGCCTAACCATCACATCATT
ACCCCGAATTGCTCACATTATCCCAAACTGCTCAATGAGATAGCTTCTGCGCCCAGTGTTCTTTTCGTTAAAGGACACGT
TGAGAAGCTGATTGAACCTCAAATCGCGATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGCTGCAGACTGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAATGGCTTGATTGTCACCAGTGGTTTAGCTTTAGGCATCGATGGTTACGCTCATGATGGT
GCCCTGGATAGGGGAGGAGAAACTTTTGCAGTGTTAGGTTCTGGTTTGGACTCCATTTATCCTGCGCGGCACAGAAACTT
AGCCGATAGGATCTGTGAAAATGGCGCACTTATTTCAGAGTTTCGCCCATGTGCGAAACCACGACCTGAACATTTCCCTC
GTCGTAACCGTATTATAAGTGGCTTGTCGTTAGGCACTTTAGTGGTGGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACG
GCTCGCTATGCGATGGAGCAAGGGAGAGAGGTGTTTGCGCTGCCCGGTTCAATTCATAGCCCAACCAGTCGCGGAGGTAA
CAGTCTCATTAAAGTTGGAGCATGTTTAGTGCAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAAACTGGT
CTATAGATCAGCAGCCGAGCTTATTCGAACCTACGCAGAATGAGGGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.312

100

0.476
  dprA Legionella pneumophila strain ERS1305867

45.732

88.649

0.405
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Acinetobacter baumannii D1279779

41.056

92.162

0.378
  dprA Acinetobacter baumannii strain A118

41.176

91.892

0.378
  dprA Acinetobacter baylyi ADP1

40.299

90.541

0.365

Multiple sequence alignment