Detailed information NTG0092280

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: OCV12_RS14795
• Genome accession: NZ_AP025506
• Coordinates: 3329410..3331104 (-)
• Length: 564 a.a.
• NCBI ID: WP_261884955.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain LMG 20537
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3324410..3336104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV12_RS14775	-	3325089..3325934 (-)	846	WP_017632098.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
OCV12_RS14780	-	3326004..3327521 (-)	1518	WP_261884953.1	SPOR domain-containing protein	-
OCV12_RS14785	aroB	3327601..3328689 (-)	1089	WP_261884954.1	3-dehydroquinate synthase	-
OCV12_RS14790	aroK	3328715..3329233 (-)	519	WP_009848907.1	shikimate kinase AroK	-
OCV12_RS14795	pilQ	3329410..3331104 (-)	1695	WP_261884955.1	type IV pilus secretin PilQ	Machinery gene
OCV12_RS14800	pilP	3331164..3331682 (-)	519	WP_261885964.1	pilus assembly protein PilP	Machinery gene
OCV12_RS14805	pilO	3331669..3332280 (-)	612	WP_261884956.1	type 4a pilus biogenesis protein PilO	Machinery gene
OCV12_RS14810	pilN	3332273..3332872 (-)	600	WP_261884957.1	PilN domain-containing protein	Machinery gene
OCV12_RS14815	pilM	3332856..3333881 (-)	1026	WP_261884958.1	type IV pilus assembly protein PilM	Machinery gene

Sequence

Protein

• Length: 564 a.a.
• Molecular weight: 61364.79 Da
• Isoelectric Point: 4.3145

>NTDB_id=92280 OCV12_RS14795 WP_261884955.1 3329410..3331104(-) (pilQ) [Vibrio pomeroyi strain LMG 20537]
MSKALQGFAVSVMLVFSVPSHAESLPNKLENIDFRVNKDKEAVIIIELATTTAVVDVQRAQEGLSIELLNTQVDDDKLYL
LDVKDFATLVEGIEVYKETPSTRLLATINNDYQYEYNLKGRFIEVVISKPVIDETTAEKNILEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIQGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSQITPYDDDGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPVLGDLPLLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide

• Length: 1695 bp

>NTDB_id=92280 OCV12_RS14795 WP_261884955.1 3329410..3331104(-) (pilQ) [Vibrio pomeroyi strain LMG 20537]
ATGAGTAAGGCTTTACAAGGTTTTGCTGTGTCTGTGATGTTGGTTTTTAGCGTGCCTAGCCACGCAGAGAGCTTGCCTAA
TAAATTAGAGAATATTGATTTTAGGGTTAATAAGGATAAAGAGGCCGTCATCATTATTGAGCTAGCCACCACCACTGCGG
TGGTCGATGTGCAGCGTGCTCAGGAAGGCTTGAGTATAGAGTTACTTAATACTCAGGTTGATGACGACAAACTCTACCTT
CTGGATGTGAAAGATTTCGCCACCTTAGTTGAAGGGATTGAAGTCTACAAAGAGACACCGAGCACTCGGCTTCTCGCGAC
CATCAATAATGACTACCAGTATGAATACAACCTAAAAGGTCGCTTCATTGAGGTGGTGATCAGTAAGCCGGTTATCGATG
AAACGACCGCTGAGAAAAACATCCTAGAGAAAGAGGGTAAGCTGATCTCAATTAACTTCCAAGATATCCCAGTACGAAAC
GTCCTTCAGTTGATCGCTGACTACAACGACTTCAATCTTGTCGTGTCTGATTCGGTCGCGGGGAATCTGACTTTACGTTT
AGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTACAAGTTAAAGGCTTGGATAAGCGTGTGGATGGCAATGTCA
TCTTGGTTGCTCCGAAAGCTGAGTTGGATCTTCGAGAGCAGCAAGCGCTCGAGAAATCTCGTTTGGAAGAGGAGTTGGGT
GAGCTCAAGTCAGAAATCATCAAGATCAATTTTGCTAAAGCCACCGACATCGCTGACATGATTGGCGGTGAGGGGGCCGT
GAGTATGTTGTCTGATCGCGGTTCGATTACCATTGATGAGCGCACTAACTCTTTATTGATTCGTGAGTTGGAAGAGAACA
TTGCGGTGATACAAGGCATCATTGAATCCTTGGATATCCCAGTAAAGCAGGTACAGATAGAGGCGCGTATCGTGACCGTC
ACCGAAGGTAATCTTGATGAGCTTGGCGTGCGCTGGGGTGTTTCCTCGACTAACGGAAGCTTCACCGTTGGCGGTTCAAT
TGAAGGTAATCATCCATCACAAATAACACCGTATGACGATGATGGCGGTAATAGTGCGATTGATGACTACCTCAACGTTA
ACTTGGGTGCGACATCGCCGAATGCATCGAGCATTGCCTTTCAGGTGGCCAAGCTTGGCTCGGATACGTTGCTCGACCTT
GAACTGTCGGCACTGCAACAAGAGTCGAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACCAATAAAAAGCCCGC
TTATATTGAGCAAGGTACTGAAATTCCTTACTTAGAGTCCTCTTCAAGTGGTGCTACATCGGTCGCATTTAAGAAAGCAG
TATTGAGTCTTAAAGTGACGCCGCAGATAACGCCCGACAATCGCTTGGTGTTGGATTTGAGTGTGACTCAAGATAGACCT
GGCCAAGTGGTGAAAACCGGAACTGGGGAAGCGGTCGCGATAGACACCCAAAGAATAGGTACGCAAGTGCTTGTTAATAA
TGGTGAAACGGTCGTTCTTGGTGGGATATTTCAACACAGCGTGAGTAGCACAGTCGATAAAGTTCCTGTGTTAGGAGACC
TGCCTTTGTTAGGTGCATTGTTCCGTCGCAGCTACGAAAATGTGGGCAAAAGTGAACTGCTTATTTTTGTCACGCCTAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (245-310)

• Bacterial type II and III secretion system protein (Secretin) (404-562)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	80.331	96.454	0.775
pilQ	Vibrio cholerae strain A1552	79.129	97.695	0.773
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	79.129	97.695	0.773
pilQ	Legionella pneumophila strain ERS1305867	42.491	96.809	0.411
pilQ	Legionella pneumophila strain Lp02	42.491	96.809	0.411
pilQ	Pseudomonas aeruginosa PAK	40.754	98.759	0.402
comQ	Acinetobacter baylyi ADP1	38.86	100	0.399
pilQ	Acinetobacter baumannii D1279779	37.306	100	0.383
pilQ	Acinetobacter baumannii strain A118	37.306	100	0.383