Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QQK36_RS22230 Genome accession   NZ_AP027978
Coordinates   4545137..4546129 (-) Length   330 a.a.
NCBI ID   WP_284329812.1    Uniprot ID   -
Organism   Escherichia coli strain VE-V11-M     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4540137..4551129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK36_RS22220 (VEV11M_42900) yieP 4543029..4543721 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  QQK36_RS22225 (VEV11M_42910) mdtD 4543744..4545171 (+) 1428 WP_097246768.1 multidrug transporter subunit MdtD -
  QQK36_RS22230 (VEV11M_42920) cytR 4545137..4546129 (-) 993 WP_284329812.1 ribose operon transcriptional repressor RbsR Regulator
  QQK36_RS22235 (VEV11M_42930) rbsK 4546133..4547062 (-) 930 WP_001300603.1 ribokinase -
  QQK36_RS22240 (VEV11M_42940) rbsB 4547188..4548078 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  QQK36_RS22245 (VEV11M_42950) rbsC 4548103..4549068 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  QQK36_RS22250 (VEV11M_42960) rbsA 4549073..4550578 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  QQK36_RS22255 (VEV11M_42970) rbsD 4550586..4551005 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=92282 QQK36_RS22230 WP_284329812.1 4545137..4546129(-) (cytR) [Escherichia coli strain VE-V11-M]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPAILRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=92282 QQK36_RS22230 WP_284329812.1 4545137..4546129(-) (cytR) [Escherichia coli strain VE-V11-M]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGATCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment