Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OCV12_RS14815 Genome accession   NZ_AP025506
Coordinates   3332856..3333881 (-) Length   341 a.a.
NCBI ID   WP_261884958.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3327856..3338881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS14790 aroK 3328715..3329233 (-) 519 WP_009848907.1 shikimate kinase AroK -
  OCV12_RS14795 pilQ 3329410..3331104 (-) 1695 WP_261884955.1 type IV pilus secretin PilQ Machinery gene
  OCV12_RS14800 pilP 3331164..3331682 (-) 519 WP_261885964.1 pilus assembly protein PilP Machinery gene
  OCV12_RS14805 pilO 3331669..3332280 (-) 612 WP_261884956.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV12_RS14810 pilN 3332273..3332872 (-) 600 WP_261884957.1 PilN domain-containing protein Machinery gene
  OCV12_RS14815 pilM 3332856..3333881 (-) 1026 WP_261884958.1 type IV pilus assembly protein PilM Machinery gene
  OCV12_RS14820 - 3334033..3336594 (+) 2562 WP_261884959.1 penicillin-binding protein 1A -
  OCV12_RS14825 oxyR 3336688..3337581 (-) 894 WP_004737158.1 DNA-binding transcriptional regulator OxyR -
  OCV12_RS14830 - 3337802..3338530 (+) 729 WP_048659171.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38203.71 Da        Isoelectric Point: 6.6643

>NTDB_id=92284 OCV12_RS14815 WP_261884958.1 3332856..3333881(-) (pilM) [Vibrio pomeroyi strain LMG 20537]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKVGFKP
VVVDTQAHGLLNIWQLASRLYPDKKNWLLVDVGIDQTSLGVIPQSSAPFYKDIAFGTQDLRSSDNPSDIEGVFGTAEDTH
RFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASIPMVTEELEHHFQLSCESLNPLSLFENKVAKRRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=92284 OCV12_RS14815 WP_261884958.1 3332856..3333881(-) (pilM) [Vibrio pomeroyi strain LMG 20537]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCTGATAACACA
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAAGAGTTTTCGATCTATCAAACCTTCGCTCA
CCAGTCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GCAGTTATCAGGTGTATGCCACTCGCAAGGAAGTGGTCGATAGCCGAGCAGATGCACTAACGAAAGTGGGTTTTAAACCT
GTGGTCGTCGATACGCAGGCGCATGGGCTGCTTAATATTTGGCAATTGGCTTCGCGCTTGTATCCCGATAAGAAGAACTG
GTTGCTGGTGGATGTTGGAATCGACCAAACCTCGCTAGGGGTTATCCCGCAGAGTTCAGCACCTTTCTATAAAGATATCG
CCTTTGGTACGCAAGATCTTCGAAGCTCGGATAACCCGAGTGATATAGAAGGCGTGTTCGGCACGGCTGAAGATACCCAC
CGATTTATTGTCAATTTGATCGAAAAGCTCAAGCGTCAGTTGCAGCTCTATTCTTCAGTTAATGCACTTCAGCCTATTTC
AGGGATCTGGCTAATGGGCGAGGGAGCCAGTATTCCGATGGTCACTGAAGAGCTAGAGCACCATTTTCAGCTGAGCTGTG
AGTCGCTCAACCCTTTGTCTCTGTTTGAGAACAAGGTGGCGAAGCGACGTCGACTGCCGATGGACTGGCAACACTTTGGC
ATTGCCGCAGGTATGGCGATGAGTGGACTTAAGTGGCAGGGAGAGAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-220)

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.839

100

0.548
  pilM Vibrio campbellii strain DS40M4

47.953

100

0.481

Multiple sequence alignment