Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OCV12_RS14800 Genome accession   NZ_AP025506
Coordinates   3331164..3331682 (-) Length   172 a.a.
NCBI ID   WP_261885964.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3326164..3336682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS14785 aroB 3327601..3328689 (-) 1089 WP_261884954.1 3-dehydroquinate synthase -
  OCV12_RS14790 aroK 3328715..3329233 (-) 519 WP_009848907.1 shikimate kinase AroK -
  OCV12_RS14795 pilQ 3329410..3331104 (-) 1695 WP_261884955.1 type IV pilus secretin PilQ Machinery gene
  OCV12_RS14800 pilP 3331164..3331682 (-) 519 WP_261885964.1 pilus assembly protein PilP Machinery gene
  OCV12_RS14805 pilO 3331669..3332280 (-) 612 WP_261884956.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV12_RS14810 pilN 3332273..3332872 (-) 600 WP_261884957.1 PilN domain-containing protein Machinery gene
  OCV12_RS14815 pilM 3332856..3333881 (-) 1026 WP_261884958.1 type IV pilus assembly protein PilM Machinery gene
  OCV12_RS14820 - 3334033..3336594 (+) 2562 WP_261884959.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19170.29 Da        Isoelectric Point: 10.6605

>NTDB_id=92281 OCV12_RS14800 WP_261885964.1 3331164..3331682(-) (pilP) [Vibrio pomeroyi strain LMG 20537]
MKPNSAFYSIVLLLALSGCKANQDSLEDFVVQVEAKARKDVEQLVPATEFLAATYQRRAFRPPFELPKEAIVQNQPLVKK
DCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92281 OCV12_RS14800 WP_261885964.1 3331164..3331682(-) (pilP) [Vibrio pomeroyi strain LMG 20537]
ATGAAACCCAATAGCGCGTTTTACTCAATCGTGTTGCTGCTTGCGCTGTCAGGCTGTAAAGCCAATCAAGATTCACTTGA
AGATTTTGTGGTGCAGGTTGAAGCCAAGGCGAGAAAAGACGTCGAGCAACTTGTCCCTGCGACTGAGTTCTTGGCCGCGA
CTTATCAGCGCCGAGCCTTTCGTCCTCCCTTTGAACTCCCTAAAGAAGCCATTGTGCAAAACCAGCCCTTGGTTAAGAAA
GACTGCTGGCAACCTAGCGCTCGCTCTCGTAACGGAAAGTTAGAGAAGTACCCACTCAGCAAGTTGCGTTTGAGAGGCGT
GATGGGCAGTGGGTCAAGTGTGTTTGGGCTAGTGCAAACACCGAAAGGCAACGTGGTAAACGTCAAGAAAGGCCAGTTTA
TCGGCCTAAACAATGGCCGAGTTACTAAGGTGACGAGCCAGTACGTTCAGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

62.577

94.767

0.593
  pilP Vibrio campbellii strain DS40M4

54.438

98.256

0.535

Multiple sequence alignment