Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV56_RS15905 Genome accession   NZ_AP025492
Coordinates   3526938..3528050 (-) Length   370 a.a.
NCBI ID   WP_086712415.1    Uniprot ID   -
Organism   Vibrio gigantis strain LMG 22741     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3521938..3533050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS15875 hemF 3522458..3523375 (-) 918 WP_086712418.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV56_RS15880 - 3523396..3523953 (-) 558 WP_086712417.1 L-threonylcarbamoyladenylate synthase -
  OCV56_RS15885 purE 3524149..3524634 (+) 486 WP_004739348.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV56_RS15890 - 3524640..3525770 (+) 1131 WP_086712416.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV56_RS15895 - 3525876..3526445 (-) 570 WP_086050337.1 type I DNA topoisomerase -
  OCV56_RS15900 - 3526458..3526934 (-) 477 WP_009848094.1 DUF494 family protein -
  OCV56_RS15905 dprA 3526938..3528050 (-) 1113 WP_086712415.1 DNA-processing protein DprA Machinery gene
  OCV56_RS15910 - 3528047..3529138 (-) 1092 WP_086712414.1 LysM peptidoglycan-binding domain-containing protein -
  OCV56_RS15915 def 3529279..3529791 (+) 513 WP_004735769.1 peptide deformylase -
  OCV56_RS15920 fmt 3529830..3530777 (+) 948 WP_086712413.1 methionyl-tRNA formyltransferase -
  OCV56_RS15925 rsmB 3530870..3532150 (+) 1281 WP_017631532.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40094.73 Da        Isoelectric Point: 6.8795

>NTDB_id=92116 OCV56_RS15905 WP_086712415.1 3526938..3528050(-) (dprA) [Vibrio gigantis strain LMG 22741]
MNEQQLSAWLTLSFVPQLGSKRLSRLLSIDSPSNIVGYSSQQLQALGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCPHYPKLLNETASAPSALFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKSGACLVQNAQDVLIEIKSLLDWSIDQQPSLFEPTPNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=92116 OCV56_RS15905 WP_086712415.1 3526938..3528050(-) (dprA) [Vibrio gigantis strain LMG 22741]
GTGAATGAGCAGCAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCTCAATTGGGTAGCAAGCGCCTTTCTCGTTTGCT
GAGTATTGATTCTCCTTCTAATATTGTTGGCTACTCAAGTCAGCAGCTACAAGCACTTGGTTTGTCTGCCAAGCAAATTT
CCTATCTAAGAGAGCAAGCCCCGAGAGAAGTGGAGGCTTGCTTAGCGTGGCAAGCAAGGCAGCCCAACCATCACATCATT
ACCCCTAACTGCCCACACTATCCCAAACTGCTGAACGAGACAGCCTCTGCGCCAAGTGCTCTTTTCGTTAAAGGTCACGT
TGAAAAATTGATTGAGCCTCAAATCGCAATGGTTGGCAGTCGTAATGCCAGTCTCGAAGGACTACAGACAGCGAAGTCCT
TCGCTAAAGAGTTTGTACAAAATGGCTTGATTGTCACGAGTGGCTTAGCGTTGGGCATTGATGGCTATGCTCATGATGGT
GCTTTGGATAAAGGAGGGGAGACCTTCGCAGTGTTGGGCTCTGGCTTGGACTCCATTTACCCTGCGCGGCATAGAAACTT
AGCCGATAGAATTTGTGAGAATGGTGCGCTGATTTCAGAGTTTCGGCCAAGTGCTAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATTAGTGGCTTGTCGCTAGGAACCTTAGTGGTTGAGGCGGCTGAGAAGAGTGGCTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCACTTCCTGGCTCAATTCATAGTCCAACCAGCCGCGGAGGTAA
CAGCTTAATTAAATCTGGTGCATGTTTGGTGCAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGCCGAATGAGGGTGAAAATGAGCAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.293

99.73

0.681
  dprA Vibrio cholerae strain A1552

58.021

100

0.586
  dprA Glaesserella parasuis strain SC1401

47.312

100

0.476
  dprA Neisseria meningitidis MC58

38.035

100

0.408
  dprA Neisseria meningitidis strain C311

38.035

100

0.408
  dprA Legionella pneumophila strain ERS1305867

45.732

88.649

0.405
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.395
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.395
  dprA Acinetobacter baumannii strain A118

41.867

89.73

0.376
  dprA Acinetobacter baumannii D1279779

42.073

88.649

0.373
  dprA Acinetobacter baylyi ADP1

40.896

90.541

0.37

Multiple sequence alignment