Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VOI49_RS00760 Genome accession   NZ_CP142018
Coordinates   120462..120788 (+) Length   108 a.a.
NCBI ID   WP_115246891.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115462..125788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS00745 - 118106..118471 (+) 366 WP_003049248.1 DUF1033 family protein -
  VOI49_RS00750 comYA 118552..119493 (+) 942 WP_003049251.1 competence type IV pilus ATPase ComGA Machinery gene
  VOI49_RS00755 comYB 119429..120460 (+) 1032 WP_226313561.1 competence type IV pilus assembly protein ComGB Machinery gene
  VOI49_RS00760 comYC 120462..120788 (+) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  VOI49_RS00765 comGD 120763..121191 (+) 429 WP_324739066.1 competence type IV pilus minor pilin ComGD -
  VOI49_RS00770 comGE 121148..121444 (+) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE -
  VOI49_RS00775 comGF 121485..121865 (+) 381 WP_324739576.1 competence type IV pilus minor pilin ComGF -
  VOI49_RS00780 comGG 121843..122217 (+) 375 WP_003049269.1 competence type IV pilus minor pilin ComGG -
  VOI49_RS00785 comYH 122280..123233 (+) 954 WP_115246884.1 class I SAM-dependent methyltransferase Machinery gene
  VOI49_RS00790 - 123292..124488 (+) 1197 WP_003049273.1 acetate kinase -
  VOI49_RS00795 - 124798..125004 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  VOI49_RS00800 - 125160..125765 (+) 606 WP_226313560.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12399.39 Da        Isoelectric Point: 9.6248

>NTDB_id=920995 VOI49_RS00760 WP_115246891.1 120462..120788(+) (comYC) [Streptococcus dysgalactiae strain lu24]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLQQLKN
DGSITDKQVKAYTDYYEKHTNEKSSLKP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=920995 VOI49_RS00760 WP_115246891.1 120462..120788(+) (comYC) [Streptococcus dysgalactiae strain lu24]
ATGAAAAACCAATGGAAACCCTTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTACAACAGTTGAAGAAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTACACAGACTATTACGAAAAACATACCAATGAAAAGTCCAGTCTTAA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

57.426

93.519

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

52.336

99.074

0.519
  comGC/cglC Streptococcus mitis SK321

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

54.545

91.667

0.5
  comGC/cglC Streptococcus mitis NCTC 12261

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae D39

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae R6

54.545

91.667

0.5
  comYC Streptococcus mutans UA159

55.319

87.037

0.481
  comYC Streptococcus mutans UA140

55.319

87.037

0.481
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417