Detailed information
Bioinformatically predicted
Overview
| Name | comYB | Type | Machinery gene |
| Locus tag | VOI49_RS00755 | Genome accession | NZ_CP142018 |
| Coordinates | 119429..120460 (+) | Length | 343 a.a. |
| NCBI ID | WP_226313561.1 | Uniprot ID | - |
| Organism | Streptococcus dysgalactiae strain lu24 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 114429..125460
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VOI49_RS00745 | - | 118106..118471 (+) | 366 | WP_003049248.1 | DUF1033 family protein | - |
| VOI49_RS00750 | comYA | 118552..119493 (+) | 942 | WP_003049251.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| VOI49_RS00755 | comYB | 119429..120460 (+) | 1032 | WP_226313561.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| VOI49_RS00760 | comYC | 120462..120788 (+) | 327 | WP_115246891.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| VOI49_RS00765 | comGD | 120763..121191 (+) | 429 | WP_324739066.1 | competence type IV pilus minor pilin ComGD | - |
| VOI49_RS00770 | comGE | 121148..121444 (+) | 297 | WP_003061797.1 | competence type IV pilus minor pilin ComGE | - |
| VOI49_RS00775 | comGF | 121485..121865 (+) | 381 | WP_324739576.1 | competence type IV pilus minor pilin ComGF | - |
| VOI49_RS00780 | comGG | 121843..122217 (+) | 375 | WP_003049269.1 | competence type IV pilus minor pilin ComGG | - |
| VOI49_RS00785 | comYH | 122280..123233 (+) | 954 | WP_115246884.1 | class I SAM-dependent methyltransferase | Machinery gene |
| VOI49_RS00790 | - | 123292..124488 (+) | 1197 | WP_003049273.1 | acetate kinase | - |
| VOI49_RS00795 | - | 124798..125004 (+) | 207 | WP_003058508.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 38947.27 Da Isoelectric Point: 9.2064
>NTDB_id=920994 VOI49_RS00755 WP_226313561.1 119429..120460(+) (comYB) [Streptococcus dysgalactiae strain lu24]
MTFLQRDISVRSKQGSKKLSSKERYKLIQLLANLLLTGFNLTEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGIG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMMLGLRHYVMPHLEAQNQLTIFLTH
FPAIFFAIILFIGVLSGGIWLHWRSQSHLKLFTHLSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMTMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWAQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL
MTFLQRDISVRSKQGSKKLSSKERYKLIQLLANLLLTGFNLTEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGIG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMMLGLRHYVMPHLEAQNQLTIFLTH
FPAIFFAIILFIGVLSGGIWLHWRSQSHLKLFTHLSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMTMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWAQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL
Nucleotide
Download Length: 1032 bp
>NTDB_id=920994 VOI49_RS00755 WP_226313561.1 119429..120460(+) (comYB) [Streptococcus dysgalactiae strain lu24]
ATGACCTTCTTGCAGCGGGACATCTCAGTCCGAAGCAAGCAAGGATCGAAAAAATTATCCAGTAAGGAACGATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACCTGACGGAGATAATAGCTTTCTTAACAAAAAGTCATCTGA
TTCCCGAGCCCTATGTTCTTCGTATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGATAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGGAACATTGAGACGACGCTTGTTAATATTCAGGG
ATATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTTCTGGTATTTCTTT
TTGTGATGATGTTAGGGTTAAGGCATTATGTTATGCCTCACTTAGAAGCTCAAAATCAGCTTACTATTTTTCTCACTCAT
TTTCCAGCTATTTTCTTTGCTATTATCCTTTTTATCGGTGTACTGTCAGGAGGAATTTGGTTGCATTGGCGATCGCAAAG
TCACCTCAAGCTTTTTACTCACCTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGACCATGGAGAAATCTTTA
TTTATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTACTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGGCTCAGTTTTTTAGCCAGCTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA
ATGACCTTCTTGCAGCGGGACATCTCAGTCCGAAGCAAGCAAGGATCGAAAAAATTATCCAGTAAGGAACGATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACCTGACGGAGATAATAGCTTTCTTAACAAAAAGTCATCTGA
TTCCCGAGCCCTATGTTCTTCGTATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGATAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGGAACATTGAGACGACGCTTGTTAATATTCAGGG
ATATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTTCTGGTATTTCTTT
TTGTGATGATGTTAGGGTTAAGGCATTATGTTATGCCTCACTTAGAAGCTCAAAATCAGCTTACTATTTTTCTCACTCAT
TTTCCAGCTATTTTCTTTGCTATTATCCTTTTTATCGGTGTACTGTCAGGAGGAATTTGGTTGCATTGGCGATCGCAAAG
TCACCTCAAGCTTTTTACTCACCTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGACCATGGAGAAATCTTTA
TTTATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTACTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGGCTCAGTTTTTTAGCCAGCTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYB | Streptococcus mutans UA140 |
53.097 |
98.834 |
0.525 |
| comYB | Streptococcus mutans UA159 |
53.097 |
98.834 |
0.525 |
| comYB | Streptococcus gordonii str. Challis substr. CH1 |
48.083 |
98.834 |
0.475 |
| comGB/cglB | Streptococcus mitis NCTC 12261 |
45.238 |
97.959 |
0.443 |
| comGB/cglB | Streptococcus mitis SK321 |
45.045 |
97.085 |
0.437 |
| comGB/cglB | Streptococcus pneumoniae Rx1 |
43.544 |
97.085 |
0.423 |
| comGB/cglB | Streptococcus pneumoniae D39 |
43.544 |
97.085 |
0.423 |
| comGB/cglB | Streptococcus pneumoniae R6 |
43.544 |
97.085 |
0.423 |
| comGB/cglB | Streptococcus pneumoniae TIGR4 |
43.544 |
97.085 |
0.423 |
| comGB | Lactococcus lactis subsp. cremoris KW2 |
42.899 |
98.542 |
0.423 |