Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCV56_RS13190 | Genome accession | NZ_AP025492 |
| Coordinates | 2991704..2992171 (+) | Length | 155 a.a. |
| NCBI ID | WP_086711969.1 | Uniprot ID | A0A5M9N6I4 |
| Organism | Vibrio gigantis strain LMG 22741 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2986704..2997171
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV56_RS13175 | pdhR | 2988632..2989393 (-) | 762 | WP_029225519.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| OCV56_RS13180 | ampD | 2989877..2990476 (-) | 600 | WP_086711967.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCV56_RS13185 | nadC | 2990560..2991450 (+) | 891 | WP_086711968.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCV56_RS13190 | pilA | 2991704..2992171 (+) | 468 | WP_086711969.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| OCV56_RS13195 | pilB | 2992174..2993859 (+) | 1686 | WP_086712029.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCV56_RS13200 | pilC | 2993875..2995104 (+) | 1230 | WP_086711970.1 | type II secretion system F family protein | Machinery gene |
| OCV56_RS13205 | pilD | 2995172..2996041 (+) | 870 | WP_086711971.1 | A24 family peptidase | Machinery gene |
| OCV56_RS13210 | coaE | 2996044..2996658 (+) | 615 | WP_086711972.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16322.75 Da Isoelectric Point: 7.6262
>NTDB_id=92097 OCV56_RS13190 WP_086711969.1 2991704..2992171(+) (pilA) [Vibrio gigantis strain LMG 22741]
MNNKRKNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHENASDAASFKTSCISDNN
GVPDVLTLNKMEIKAIGGSASGAVDVRVKASAAKGPIKTGETYVMTATYAAEGITWEAKCYSDAGLTTAQDTYCP
MNNKRKNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHENASDAASFKTSCISDNN
GVPDVLTLNKMEIKAIGGSASGAVDVRVKASAAKGPIKTGETYVMTATYAAEGITWEAKCYSDAGLTTAQDTYCP
Nucleotide
Download Length: 468 bp
>NTDB_id=92097 OCV56_RS13190 WP_086711969.1 2991704..2992171(+) (pilA) [Vibrio gigantis strain LMG 22741]
ATGAATAACAAAAGAAAAAATCAGAAAGGTTTCACCTTAATTGAATTGATGATCGTGGTGGCGATTATAGGAATCTTGTC
TGCGTTTGCTGTGCCGGCTTATCAAGATTATACGAAAAAAGCGACTCTATCAGAATTTCCAAAAGCAGCCGCTGCTGTAA
AGATGGCAGTTGAACTGTGTGCTCACGAAAATGCATCTGATGCAGCATCATTTAAAACTAGCTGCATTTCAGACAACAAC
GGTGTTCCCGACGTGCTAACACTAAATAAGATGGAAATTAAAGCTATTGGCGGGAGCGCATCTGGAGCCGTAGATGTTCG
TGTTAAGGCGTCAGCAGCTAAAGGGCCAATTAAAACTGGTGAAACCTATGTTATGACTGCAACTTATGCAGCTGAAGGTA
TCACTTGGGAAGCCAAATGTTACTCTGACGCAGGCCTCACTACAGCACAAGATACTTATTGCCCGTAA
ATGAATAACAAAAGAAAAAATCAGAAAGGTTTCACCTTAATTGAATTGATGATCGTGGTGGCGATTATAGGAATCTTGTC
TGCGTTTGCTGTGCCGGCTTATCAAGATTATACGAAAAAAGCGACTCTATCAGAATTTCCAAAAGCAGCCGCTGCTGTAA
AGATGGCAGTTGAACTGTGTGCTCACGAAAATGCATCTGATGCAGCATCATTTAAAACTAGCTGCATTTCAGACAACAAC
GGTGTTCCCGACGTGCTAACACTAAATAAGATGGAAATTAAAGCTATTGGCGGGAGCGCATCTGGAGCCGTAGATGTTCG
TGTTAAGGCGTCAGCAGCTAAAGGGCCAATTAAAACTGGTGAAACCTATGTTATGACTGCAACTTATGCAGCTGAAGGTA
TCACTTGGGAAGCCAAATGTTACTCTGACGCAGGCCTCACTACAGCACAAGATACTTATTGCCCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.824 |
98.71 |
0.581 |
| pilA2 | Legionella pneumophila str. Paris |
44.697 |
85.161 |
0.381 |
| pilA | Haemophilus influenzae 86-028NP |
39.189 |
95.484 |
0.374 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
43.939 |
85.161 |
0.374 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
94.839 |
0.368 |
| pilA | Glaesserella parasuis strain SC1401 |
40.714 |
90.323 |
0.368 |
| pilA | Pseudomonas aeruginosa PAK |
38.095 |
94.839 |
0.361 |
| pilA | Haemophilus influenzae Rd KW20 |
39.716 |
90.968 |
0.361 |