Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VML59_RS10490 Genome accession   NZ_CP142003
Coordinates   2030602..2030937 (+) Length   111 a.a.
NCBI ID   WP_000982033.1    Uniprot ID   A0A1J9ZM21
Organism   Bacillus pacificus strain AT31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2025602..2035937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS10465 - 2025874..2026626 (-) 753 WP_000499662.1 hypothetical protein -
  VML59_RS10470 - 2026736..2027383 (+) 648 WP_000165935.1 HD domain-containing protein -
  VML59_RS10475 - 2027380..2029275 (+) 1896 WP_324740728.1 ABC-F family ATP-binding cassette domain-containing protein -
  VML59_RS10480 - 2029351..2030082 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family membrane protein -
  VML59_RS10485 - 2030188..2030442 (+) 255 WP_000975124.1 DUF4318 domain-containing protein -
  VML59_RS10490 ssbA 2030602..2030937 (+) 336 WP_000982033.1 single-stranded DNA-binding protein Machinery gene
  VML59_RS10495 - 2030966..2031556 (-) 591 WP_000943165.1 TetR/AcrR family transcriptional regulator -
  VML59_RS10500 - 2031679..2032812 (-) 1134 Protein_1986 FAD-dependent monooxygenase -
  VML59_RS10505 - 2033071..2034198 (+) 1128 WP_000692569.1 conserved virulence factor C family protein -
  VML59_RS10510 - 2034202..2034585 (+) 384 WP_014893790.1 thiol-disulfide oxidoreductase DCC family protein -
  VML59_RS10515 - 2034669..2035103 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  VML59_RS10520 - 2035153..2035929 (+) 777 WP_014893789.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12792.64 Da        Isoelectric Point: 9.4610

>NTDB_id=920810 VML59_RS10490 WP_000982033.1 2030602..2030937(+) (ssbA) [Bacillus pacificus strain AT31]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTR
NYEDNQGKRIYITEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=920810 VML59_RS10490 WP_000982033.1 2030602..2030937(+) (ssbA) [Bacillus pacificus strain AT31]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGCTTAGGTGAGCAGCAAGTAGATTTTATTAATTGCGTCGTAT
GGAGAAGGTCAGCTGAGAATGTAACTGAATATTGTACGAAAGGTTCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGATAATCAAGGAAAGAGAATATATATAACGGAAGTTGTGATTGAGAGCATTACATTTTTGGAGAGAAGGAG
GGAGGGCGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9ZM21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

95.495

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.545

99.099

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae D39

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae R6

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis SK321

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

99.099

0.423