Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCU78_RS13150 Genome accession   NZ_AP025490
Coordinates   2996535..2998247 (-) Length   570 a.a.
NCBI ID   WP_137375094.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2991535..3003247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS13130 - 2992010..2992864 (-) 855 WP_137375098.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCU78_RS13135 - 2993082..2994650 (-) 1569 WP_137375097.1 AAA family ATPase -
  OCU78_RS13140 aroB 2994727..2995815 (-) 1089 WP_137375096.1 3-dehydroquinate synthase -
  OCU78_RS13145 aroK 2995840..2996358 (-) 519 WP_137375095.1 shikimate kinase AroK -
  OCU78_RS13150 pilQ 2996535..2998247 (-) 1713 WP_137375094.1 type IV pilus secretin PilQ Machinery gene
  OCU78_RS13155 pilP 2998307..2998822 (-) 516 WP_137375093.1 pilus assembly protein PilP Machinery gene
  OCU78_RS13160 pilO 2998809..2999402 (-) 594 WP_137375092.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCU78_RS13165 - 2999533..3000099 (-) 567 Protein_2514 PilN domain-containing protein -
  OCU78_RS13170 pilM 3000083..3001105 (-) 1023 WP_137375090.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 61809.31 Da        Isoelectric Point: 4.2836

>NTDB_id=92065 OCU78_RS13150 WP_137375094.1 2996535..2998247(-) (pilQ) [Vibrio gallaecicus strain CECT 7244]
MNKVFQSVLLFVALSFALVTQAETSSNELKSIDFRLNKDKDAVIIIELESSSTVVDVQRAQEGLSIELLSTQVADDKLYM
LDVKDFSTLVDTIEVFRESPSTRLLASIGQDYHYEYTLKGRFIEVVISKLEEDAPAVEKSILEKEGKLISINFQDIPVRN
VLQLIADYNSFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIVKINFAKASEIAEMIGGDSTVSMLSERGSITIDERTNSLLLRELPENIAVIREIVESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGISSTNGNNTIGGSIESNLATIGLYDGGGGDGEEGGGGLPIDDFLNVNLGATSPNASSIAFQVAKLGS
DTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLS
VTQDRPGQVVKTGTGEAIAIDTQRIGTQVLVNNGETVVLGGIFQHSVTNTVDKVPLLGDLPLLGALFSRSYENVGKSELL
IFVTPKVVIQ

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=92065 OCU78_RS13150 WP_137375094.1 2996535..2998247(-) (pilQ) [Vibrio gallaecicus strain CECT 7244]
ATGAATAAGGTTTTTCAGAGTGTTTTACTCTTTGTTGCCTTGAGCTTTGCGTTAGTGACGCAAGCTGAAACGTCTTCCAA
TGAATTAAAGAGTATCGATTTTAGGCTAAATAAAGATAAAGATGCCGTGATCATTATCGAACTTGAAAGTAGCTCAACAG
TGGTTGATGTGCAGCGAGCACAAGAAGGGTTAAGTATTGAGTTATTAAGTACTCAAGTGGCAGACGACAAGCTGTATATG
CTTGATGTAAAAGATTTTTCGACTCTTGTGGATACGATTGAAGTATTTCGTGAATCACCGAGTACACGTTTATTAGCGTC
TATCGGTCAAGACTATCATTACGAATATACACTTAAAGGTCGATTCATTGAGGTAGTAATAAGTAAGCTAGAAGAAGATG
CTCCTGCTGTTGAAAAAAGTATTCTTGAGAAAGAAGGTAAATTAATCTCAATTAACTTTCAGGACATTCCTGTGCGAAAT
GTTCTCCAACTTATTGCCGACTACAACAGCTTTAACTTAGTGGTTTCAGACTCGGTTTCTGGAAACCTAACTTTAAGATT
GGATGGCGTTCCTTGGCAGCAAGTACTTGATATTATTTTACAGGTTAAGGGGCTTGATAAACGAGTTGACGGCAATGTTA
TTTTAGTCGCACCTAAAGCTGAACTTGATTTGAGAGAGCAGCAAGCTTTAGAAAAATCACGACTTGAAGAAGAGCTGGGA
GAGTTGAAGTCTGAAATTGTAAAAATTAATTTTGCTAAGGCTTCTGAAATCGCAGAAATGATTGGTGGTGATAGTACCGT
GAGCATGCTTTCTGAGCGTGGTTCAATCACGATAGATGAGAGAACTAACTCCTTATTGTTGAGAGAGTTACCTGAAAATA
TTGCCGTTATTCGTGAAATTGTTGAGTCACTTGATATACCGGTTAAACAGGTACAAATTGAAGCTCGTATTGTAACGGTT
ACAGAGGGCAACCTTGATGAGTTAGGGGTCCGATGGGGCATATCCTCGACAAATGGAAACAACACCATAGGGGGCTCTAT
AGAGAGTAACCTAGCGACTATTGGTCTCTACGATGGCGGCGGCGGTGATGGTGAAGAAGGAGGCGGTGGATTACCGATCG
ATGATTTCTTAAATGTTAACTTAGGTGCGACCTCACCGAATGCTTCAAGTATTGCTTTTCAAGTTGCTAAACTAGGGTCA
GATACTCTGCTTGATTTAGAGCTATCAGCACTACAGCAAGAATCTAAAGCTGAAATCATTTCGAGCCCGCGTTTAATTAC
GACGAATAAGAAACCCGCTTATATTGAGCAAGGTACTGAAATACCTTACTTGGAGTCTTCATCTAGTGGTGCTACATCGG
TCGCATTTAAGAAAGCGGTTTTAAGCTTGAAAGTCACACCGCAAATTACCCCTGACAATCGATTGGTCTTGGATTTAAGC
GTAACCCAAGATAGACCTGGTCAAGTTGTTAAGACTGGTACTGGTGAAGCGATAGCGATCGATACACAGAGGATAGGAAC
GCAAGTGCTTGTTAATAATGGGGAAACGGTTGTTCTTGGCGGTATCTTTCAACACAGTGTAACCAACACTGTGGATAAAG
TACCTTTGCTCGGGGACCTTCCTTTACTTGGCGCATTATTTAGTCGTAGCTATGAAAATGTTGGTAAAAGTGAGCTGCTG
ATCTTCGTTACACCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(410-568)

Secretin and TonB N terminus short domain (STN)

(171-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

81.374

97.018

0.789
  pilQ Vibrio cholerae strain A1552

77.699

99.123

0.77
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.699

99.123

0.77
  pilQ Legionella pneumophila strain Lp02

41.682

98.07

0.409
  pilQ Legionella pneumophila strain ERS1305867

41.682

98.07

0.409
  comQ Acinetobacter baylyi ADP1

39.071

100

0.398
  pilQ Pseudomonas aeruginosa PAK

39.964

97.895

0.391
  pilQ Acinetobacter baumannii strain A118

36.615

100

0.372
  pilQ Acinetobacter baumannii D1279779

36.615

100

0.372

Multiple sequence alignment