Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OCU78_RS13155 Genome accession   NZ_AP025490
Coordinates   2998307..2998822 (-) Length   171 a.a.
NCBI ID   WP_137375093.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2993307..3003822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS13140 aroB 2994727..2995815 (-) 1089 WP_137375096.1 3-dehydroquinate synthase -
  OCU78_RS13145 aroK 2995840..2996358 (-) 519 WP_137375095.1 shikimate kinase AroK -
  OCU78_RS13150 pilQ 2996535..2998247 (-) 1713 WP_137375094.1 type IV pilus secretin PilQ Machinery gene
  OCU78_RS13155 pilP 2998307..2998822 (-) 516 WP_137375093.1 pilus assembly protein PilP Machinery gene
  OCU78_RS13160 pilO 2998809..2999402 (-) 594 WP_137375092.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCU78_RS13165 - 2999533..3000099 (-) 567 Protein_2514 PilN domain-containing protein -
  OCU78_RS13170 pilM 3000083..3001105 (-) 1023 WP_137375090.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18913.26 Da        Isoelectric Point: 10.3800

>NTDB_id=92066 OCU78_RS13155 WP_137375093.1 2998307..2998822(-) (pilP) [Vibrio gallaecicus strain CECT 7244]
MKPSKLAYLSLILMLVGCKANQDSLEEYVSKVEEQARKEVAQLKPAAEFIAATYDPKISRGPFVLPKEAIVQDQPIVKKD
CWQPSYRSKNGKLEKYPLSKLRLKGVMGSGSTVSGLVQTPVGNVVKIQKGQFIGLNNGRVTKVTSKYVLINETLPDGLGC
WHKRNVKLALK

Nucleotide


Download         Length: 516 bp        

>NTDB_id=92066 OCU78_RS13155 WP_137375093.1 2998307..2998822(-) (pilP) [Vibrio gallaecicus strain CECT 7244]
ATGAAGCCCAGTAAACTGGCTTATTTGAGCCTGATATTAATGCTTGTAGGTTGTAAAGCGAATCAAGATTCCTTGGAAGA
ATATGTATCAAAGGTTGAGGAGCAAGCAAGAAAAGAAGTTGCTCAGTTAAAACCAGCTGCCGAATTTATTGCTGCAACTT
ACGATCCGAAAATATCTAGAGGACCTTTTGTTTTACCCAAAGAAGCGATTGTGCAAGACCAGCCAATTGTTAAAAAAGAC
TGTTGGCAGCCAAGTTATCGTTCTAAAAATGGGAAGTTGGAAAAATACCCACTTAGTAAACTGCGTTTAAAAGGGGTCAT
GGGAAGCGGTTCTACTGTTTCTGGATTAGTTCAAACTCCTGTTGGTAATGTGGTGAAAATTCAAAAAGGTCAGTTCATTG
GGTTGAATAACGGTCGCGTAACAAAAGTGACCAGTAAATATGTACTGATAAATGAAACCCTTCCAGATGGTCTAGGTTGT
TGGCATAAACGTAACGTCAAGCTCGCTTTGAAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

64.706

99.415

0.643
  pilP Vibrio campbellii strain DS40M4

54.386

100

0.544

Multiple sequence alignment