Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VDS57_RS07190 Genome accession   NZ_CP141839
Coordinates   1355938..1356279 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain PN1236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1350938..1361279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS07175 (VDS57_07175) hepAB 1351181..1353949 (+) 2769 WP_041337864.1 DEAD/DEAH box helicase -
  VDS57_RS07180 (VDS57_07180) ywpJ 1354075..1354932 (-) 858 WP_264099334.1 phosphatase YwpJ -
  VDS57_RS07185 (VDS57_07185) glcR 1354938..1355714 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  VDS57_RS07190 (VDS57_07190) ssbB 1355938..1356279 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  VDS57_RS07195 (VDS57_07195) ywpG 1356356..1356739 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  VDS57_RS07200 (VDS57_07200) ywpF 1356914..1357324 (+) 411 WP_014481144.1 YwpF-like family protein -
  VDS57_RS07205 (VDS57_07205) - 1357509..1358756 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  VDS57_RS07210 (VDS57_07210) - 1358841..1359233 (-) 393 Protein_1410 class A sortase -
  VDS57_RS22170 - 1359307..1359459 (-) 153 Protein_1411 prealbumin-like fold domain-containing protein -
  VDS57_RS07220 (VDS57_07220) ywpD 1359493..1360329 (+) 837 WP_014481147.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=920141 VDS57_RS07190 WP_003227798.1 1355938..1356279(-) (ssbB) [Bacillus subtilis strain PN1236]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=920141 VDS57_RS07190 WP_003227798.1 1355938..1356279(-) (ssbB) [Bacillus subtilis strain PN1236]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389