Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV36_RS01235 Genome accession   NZ_AP025483
Coordinates   275656..277371 (+) Length   571 a.a.
NCBI ID   WP_135457723.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270656..282371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS01215 pilM 272885..273910 (+) 1026 WP_029224878.1 type IV pilus assembly protein PilM Machinery gene
  OCV36_RS01220 pilN 273894..274493 (+) 600 WP_135457719.1 PilN domain-containing protein Machinery gene
  OCV36_RS01225 pilO 274486..275115 (+) 630 WP_135457721.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV36_RS01230 pilP 275102..275620 (+) 519 WP_029224876.1 pilus assembly protein PilP Machinery gene
  OCV36_RS01235 pilQ 275656..277371 (+) 1716 WP_135457723.1 type IV pilus secretin PilQ Machinery gene
  OCV36_RS01240 aroK 277548..278066 (+) 519 WP_017073703.1 shikimate kinase AroK -
  OCV36_RS01245 aroB 278091..279179 (+) 1089 WP_017073702.1 3-dehydroquinate synthase -
  OCV36_RS01250 - 279259..280776 (+) 1518 WP_135457725.1 SPOR domain-containing protein -
  OCV36_RS01255 - 280846..281694 (+) 849 WP_135457727.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62324.08 Da        Isoelectric Point: 4.4045

>NTDB_id=91951 OCV36_RS01235 WP_135457723.1 275656..277371(+) (pilQ) [Vibrio echinoideorum strain DSM 107264]
MIKGISGIVNKALQGIVLSLMLFFTVTIHAETSNKLENIDFRVNKDKDAIIIIELATTTAVVDVQRVQEGLSIELINTQV
DDDKLYLLDVRDFATLVEGIEVFRESPSTRLLVNISNDYQYEYNLKGRFIEVVVSQPKVDKAAVEKSILEKEGKLISINF
QDIPVRNVLQLIADYNDFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKS
RLEEELGELKSEIIKINFAKATDIADMIGGDGSVSMLSDRGSITIDERTNSLLIRELEENITVIRGIIESLDIPVKQVQI
EARIVTVTEGNLDELGVRWGVSSTNGSFTVGGSIEGNHLSSITPYDDNSGNSVIDDFLNVNLGATSPNASSIAFQVAKLG
SDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGELFRRSYENVGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=91951 OCV36_RS01235 WP_135457723.1 275656..277371(+) (pilQ) [Vibrio echinoideorum strain DSM 107264]
ATGATTAAAGGAATAAGTGGGATAGTGAACAAAGCGCTGCAAGGCATTGTGTTGTCTTTGATGTTGTTTTTTACGGTAAC
GATTCACGCCGAAACCTCCAACAAGTTGGAGAATATTGATTTCAGGGTAAATAAAGACAAAGACGCGATCATCATTATCG
AATTGGCAACCACCACTGCGGTTGTCGATGTTCAGCGAGTGCAAGAGGGCTTAAGTATTGAGTTGATCAATACTCAGGTA
GACGACGATAAACTGTATCTACTGGACGTCAGGGATTTTGCGACCTTAGTTGAGGGTATTGAAGTCTTTAGAGAATCGCC
GAGCACTCGGCTGTTGGTAAACATCTCCAATGACTACCAATATGAGTACAACCTTAAAGGACGCTTTATTGAGGTTGTTG
TGAGTCAGCCTAAGGTCGATAAAGCGGCGGTTGAGAAAAGCATCTTGGAAAAAGAAGGCAAGCTGATATCGATTAACTTC
CAAGACATTCCTGTTCGTAATGTTCTTCAATTGATAGCCGATTACAATGATTTCAACTTAGTGGTGTCTGATTCGGTCTC
AGGAAATTTAACTTTACGGTTAGATGGCGTCCCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGATTGGATA
AACGCGTTGATGGTAACGTTATCTTAGTGGCACCAAAAGCTGAGCTCGATCTTCGCGAGCAACAAGCGTTAGAAAAATCT
CGCTTAGAAGAGGAGTTGGGAGAGCTTAAGTCGGAAATTATCAAGATTAACTTTGCCAAAGCGACCGATATCGCAGACAT
GATTGGCGGTGATGGCTCGGTGAGTATGCTGTCTGATCGAGGTTCAATTACTATTGATGAGCGTACCAACTCGCTTTTGA
TTCGAGAGCTAGAAGAAAACATTACGGTGATAAGAGGCATTATTGAATCCTTGGATATCCCGGTAAAACAAGTACAGATA
GAGGCACGCATTGTGACGGTTACTGAGGGTAACCTTGATGAACTTGGGGTACGTTGGGGCGTTTCTTCAACAAATGGTAG
CTTCACTGTTGGCGGTTCGATAGAAGGTAACCATTTATCTTCAATTACTCCTTATGACGACAATAGTGGAAACAGCGTGA
TTGATGACTTTCTAAATGTAAACTTGGGTGCGACATCTCCGAATGCTTCAAGCATTGCTTTTCAGGTTGCTAAGCTCGGT
TCTGATACTCTGCTCGACCTTGAGTTATCAGCACTACAACAAGAGTCGAAAGCCGAAATTATTTCTAGCCCACGATTAAT
CACCACCAATAAAAAACCGGCTTATATTGAGCAAGGCACGGAAATTCCCTATTTAGAGTCCTCTTCTAGTGGTGCAACAT
CGGTCGCATTTAAGAAAGCGGTATTGAGTCTGAAGGTGACACCGCAGATCACGCCAGATAATCGCTTGGTGTTGGATTTG
AGTGTGACTCAAGATAGACCAGGGCAAGTTGTGAAAACGGGAACAGGTGAGGCTGTGGCCATTGATACCCAAAGGATTGG
CACGCAAGTGCTTGTTAATAATGGTGAAACGGTCGTGCTCGGTGGGATTTTTCAACACAGTGTCAGCAGCACGGTCGATA
AAGTTCCTCTGTTGGGAGACTTGCCAGTTTTAGGCGAATTGTTCCGTCGCAGCTATGAAAATGTGGGCAAAAGTGAACTA
CTTATTTTTGTTACACCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(178-226)

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(252-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

80.367

95.447

0.767
  pilQ Vibrio cholerae strain A1552

78.276

97.548

0.764
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.276

97.548

0.764
  pilQ Legionella pneumophila strain ERS1305867

43.199

95.271

0.412
  pilQ Legionella pneumophila strain Lp02

43.199

95.271

0.412
  comQ Acinetobacter baylyi ADP1

39.68

98.424

0.391
  pilQ Pseudomonas aeruginosa PAK

39.714

97.898

0.389
  pilQ Acinetobacter baumannii D1279779

36.931

100

0.384
  pilQ Acinetobacter baumannii strain A118

36.931

100

0.384

Multiple sequence alignment