Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | OCV36_RS01225 | Genome accession | NZ_AP025483 |
| Coordinates | 274486..275115 (+) | Length | 209 a.a. |
| NCBI ID | WP_135457721.1 | Uniprot ID | - |
| Organism | Vibrio echinoideorum strain DSM 107264 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 269486..280115
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV36_RS01210 | - | 270172..272733 (-) | 2562 | WP_167853048.1 | penicillin-binding protein 1A | - |
| OCV36_RS01215 | pilM | 272885..273910 (+) | 1026 | WP_029224878.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCV36_RS01220 | pilN | 273894..274493 (+) | 600 | WP_135457719.1 | PilN domain-containing protein | Machinery gene |
| OCV36_RS01225 | pilO | 274486..275115 (+) | 630 | WP_135457721.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCV36_RS01230 | pilP | 275102..275620 (+) | 519 | WP_029224876.1 | pilus assembly protein PilP | Machinery gene |
| OCV36_RS01235 | pilQ | 275656..277371 (+) | 1716 | WP_135457723.1 | type IV pilus secretin PilQ | Machinery gene |
| OCV36_RS01240 | aroK | 277548..278066 (+) | 519 | WP_017073703.1 | shikimate kinase AroK | - |
| OCV36_RS01245 | aroB | 278091..279179 (+) | 1089 | WP_017073702.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24269.97 Da Isoelectric Point: 4.7745
>NTDB_id=91949 OCV36_RS01225 WP_135457721.1 274486..275115(+) (pilO) [Vibrio echinoideorum strain DSM 107264]
MANLQNKISWQNRMSLRELDVDEITEWPLLPQLLVIMVLMVLIQGVGTWLYILPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYLLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKAEVNDETQ
MANLQNKISWQNRMSLRELDVDEITEWPLLPQLLVIMVLMVLIQGVGTWLYILPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYLLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKAEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=91949 OCV36_RS01225 WP_135457721.1 274486..275115(+) (pilO) [Vibrio echinoideorum strain DSM 107264]
ATGGCTAACCTTCAAAATAAGATTAGTTGGCAAAACAGGATGAGTTTGCGAGAGCTCGATGTTGATGAGATCACTGAATG
GCCTTTGTTGCCTCAACTGCTAGTGATTATGGTGTTAATGGTGCTTATCCAAGGGGTAGGGACTTGGCTCTATATTCTGC
CGTTGGACGATGAACTTCAACAGATGAAGCAACAAGAGCAGACGCTTAAAGCCACTTTGAGAATTAAAGCCAATAAGGTG
GCGGCTTTGCCTAAGCTGCAGAGCCAACTAGATGAGTTGACCAGTCGCTACGACTACCTATTAGAGCAACTACCGGTTCA
GAAAGAGCTAGCCAGCATGTTGGCCTCAGTGAATGAGCTTGGGTTGGATAATAAACTGACGTTTACGCGGATTGATTGGG
GACAGAAGCAAAACAAGGCGTTCCTGTATCTATTGCCACTCAATATCGAACTGACTGGTGATTACCACGAGATTGGTGAT
TTCTCTGCGGCCATCGCTAAGCTGCCGCGCATTATTAGCTTTGATGATGTGAATTGGCAACGAGTCAGTCAAGAAAGCAG
CACACTGCATTTTAGGGTTCGAGCTTATACCTACCAGTTCAAAGCGGAGGTCAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAAGATTAGTTGGCAAAACAGGATGAGTTTGCGAGAGCTCGATGTTGATGAGATCACTGAATG
GCCTTTGTTGCCTCAACTGCTAGTGATTATGGTGTTAATGGTGCTTATCCAAGGGGTAGGGACTTGGCTCTATATTCTGC
CGTTGGACGATGAACTTCAACAGATGAAGCAACAAGAGCAGACGCTTAAAGCCACTTTGAGAATTAAAGCCAATAAGGTG
GCGGCTTTGCCTAAGCTGCAGAGCCAACTAGATGAGTTGACCAGTCGCTACGACTACCTATTAGAGCAACTACCGGTTCA
GAAAGAGCTAGCCAGCATGTTGGCCTCAGTGAATGAGCTTGGGTTGGATAATAAACTGACGTTTACGCGGATTGATTGGG
GACAGAAGCAAAACAAGGCGTTCCTGTATCTATTGCCACTCAATATCGAACTGACTGGTGATTACCACGAGATTGGTGAT
TTCTCTGCGGCCATCGCTAAGCTGCCGCGCATTATTAGCTTTGATGATGTGAATTGGCAACGAGTCAGTCAAGAAAGCAG
CACACTGCATTTTAGGGTTCGAGCTTATACCTACCAGTTCAAAGCGGAGGTCAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
75.13 |
92.344 |
0.694 |
| pilO | Vibrio campbellii strain DS40M4 |
69.072 |
92.823 |
0.641 |