Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN39_RS02820 Genome accession   NZ_CP141721
Coordinates   573684..573989 (-) Length   101 a.a.
NCBI ID   WP_017368746.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568684..578989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS02795 (VNN39_02795) - 570570..571439 (+) 870 WP_338997824.1 RluA family pseudouridine synthase -
  VNN39_RS02800 (VNN39_02800) - 571526..572371 (-) 846 WP_017368750.1 zinc ABC transporter substrate-binding protein -
  VNN39_RS02805 (VNN39_02805) comGF 572607..573047 (-) 441 WP_017368749.1 competence type IV pilus minor pilin ComGF -
  VNN39_RS02810 (VNN39_02810) comGE 573028..573261 (-) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  VNN39_RS02815 (VNN39_02815) comGD 573293..573709 (-) 417 WP_165711775.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN39_RS02820 (VNN39_02820) comYC 573684..573989 (-) 306 WP_017368746.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN39_RS02825 (VNN39_02825) comGB 574008..575027 (-) 1020 WP_338998085.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN39_RS02830 (VNN39_02830) comGA 574966..575910 (-) 945 WP_338997825.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN39_RS02835 (VNN39_02835) rpsU 576097..576273 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN39_RS02840 (VNN39_02840) guaB 576398..577879 (-) 1482 WP_339007213.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11263.19 Da        Isoelectric Point: 10.0997

>NTDB_id=918896 VNN39_RS02820 WP_017368746.1 573684..573989(-) (comYC) [Lactococcus formosensis strain M04020401 EE5e5]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVSGGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918896 VNN39_RS02820 WP_017368746.1 573684..573989(-) (comYC) [Lactococcus formosensis strain M04020401 EE5e5]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTAATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACAGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGCAAAACGTAATGTCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

66.316

94.059

0.624
  comYC Streptococcus mutans UA159

66.316

94.059

0.624
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396