Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OC193_RS14340 Genome accession   NZ_AP025476
Coordinates   3176902..3178596 (-) Length   564 a.a.
NCBI ID   WP_048662999.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3171902..3183596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS14320 - 3172581..3173426 (-) 846 WP_048662996.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OC193_RS14325 - 3173496..3175013 (-) 1518 WP_048662997.1 SPOR domain-containing protein -
  OC193_RS14330 aroB 3175093..3176181 (-) 1089 WP_048662998.1 3-dehydroquinate synthase -
  OC193_RS14335 aroK 3176207..3176725 (-) 519 WP_017061125.1 shikimate kinase AroK -
  OC193_RS14340 pilQ 3176902..3178596 (-) 1695 WP_048662999.1 type IV pilus secretin PilQ Machinery gene
  OC193_RS14345 pilP 3178656..3179174 (-) 519 WP_048663000.1 pilus assembly protein PilP Machinery gene
  OC193_RS14350 pilO 3179161..3179772 (-) 612 WP_048659164.1 type 4a pilus biogenesis protein PilO Machinery gene
  OC193_RS14355 pilN 3179765..3180364 (-) 600 WP_048663001.1 PilN domain-containing protein Machinery gene
  OC193_RS14360 pilM 3180348..3181373 (-) 1026 WP_048663002.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61483.07 Da        Isoelectric Point: 4.3617

>NTDB_id=91887 OC193_RS14340 WP_048662999.1 3176902..3178596(-) (pilQ) [Vibrio crassostreae strain LMG 22240]
MNKGLKGLMVSVMLVFSVFSYAESLPNKLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELINTQVDDDKLYL
LDVKDFATLVEGIEVYKETPSTRLLATISNDYQYEYNLKGRFIEVVISKPVIDEVTKEKSVLEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENISVIRGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSQITPYDDDGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=91887 OC193_RS14340 WP_048662999.1 3176902..3178596(-) (pilQ) [Vibrio crassostreae strain LMG 22240]
ATGAACAAAGGGCTGAAAGGCTTGATGGTGTCTGTGATGTTGGTTTTTAGCGTATTTAGTTACGCAGAGAGCTTACCAAA
TAAATTAGAGAATATTGATTTTAGGGTTAATAAGGATAAAGACGCCGTCATTATCATTGAGCTAGCGACCAGCACCGCTG
TGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAGTTGATCAATACTCAGGTTGATGATGACAAGCTTTACCTA
CTAGATGTAAAAGACTTCGCTACCTTGGTTGAAGGTATTGAAGTCTATAAAGAGACACCAAGCACTCGGCTTCTAGCGAC
GATTAGCAATGACTATCAGTATGAATACAATCTAAAGGGACGTTTTATTGAGGTGGTGATCAGCAAACCAGTTATCGATG
AAGTGACCAAAGAAAAAAGCGTTCTAGAGAAAGAGGGCAAGCTGATATCGATTAACTTCCAAGACATCCCAGTACGAAAT
GTCCTGCAGCTGATTGCTGACTATAACGATTTTAACTTAGTCGTATCTGATTCGGTCGCCGGAAACCTCACTTTACGTTT
AGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGATTGGATAAGCGCGTGGATGGCAATGTCA
TCTTGGTTGCGCCGAAAGCTGAGTTGGATCTTCGAGAGCAACAAGCGTTAGAAAAATCGCGTTTAGAAGAGGAGCTTGGG
GAGCTTAAGTCGGAAATCATCAAGATTAACTTTGCTAAGGCCACCGATATTGCCGACATGATTGGCGGTGAAGGTGCGGT
CAGCATGTTGTCTGATCGCGGTTCGATTACCATTGATGAGCGCACTAACTCTTTATTGATTCGTGAGTTGGAGGAGAACA
TTTCCGTGATACGAGGCATCATTGAATCCTTAGATATTCCCGTGAAACAGGTGCAGATAGAGGCGCGTATCGTGACCGTC
ACTGAGGGTAATCTTGATGAGCTTGGCGTGCGCTGGGGTGTTTCCTCGACCAACGGAAGCTTCACCGTTGGTGGTTCAAT
AGAAGGTAATCATCCATCACAAATCACACCGTATGACGATGATGGTGGCAACAGTGCAATTGATGACTACCTCAACGTTA
ACTTGGGGGCGACATCGCCGAATGCATCGAGCATTGCTTTTCAGGTCGCCAAGCTTGGGTCGGATACTTTGCTCGACCTT
GAACTGTCGGCACTTCAACAAGAGTCGAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACCAATAAAAAGCCCGC
TTATATTGAGCAAGGTACTGAAATCCCTTACTTAGAGTCTTCTTCAAGTGGTGCAACGTCGGTCGCATTTAAGAAAGCGG
TATTGAGCCTCAAGGTGACGCCGCAGATCACACCCGACAATCGTTTGGTATTGGATTTGAGCGTGACTCAAGATAGACCT
GGGCAAGTGGTCAAGACCGGAACAGGGGAAGCGGTAGCAATTGACACGCAAAGAATAGGTACGCAAGTGCTTGTTAATAA
TGGTGAAACTGTCGTTCTTGGCGGGATATTTCAACACAGCGTAAGCAGCACGGTGGATAAAGTTCCTCTGTTGGGAGACC
TGCCAGTTTTGGGTGCATTGTTCCGTCGCAGCTATGAAAATGTGGGTAAAAGTGAACTACTTATTTTTGTCACACCCAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(404-562)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.875

100

0.793
  pilQ Vibrio cholerae strain A1552

77.875

100

0.793
  pilQ Vibrio campbellii strain DS40M4

79.747

98.05

0.782
  pilQ Legionella pneumophila strain Lp02

42.491

96.809

0.411
  pilQ Legionella pneumophila strain ERS1305867

42.491

96.809

0.411
  pilQ Pseudomonas aeruginosa PAK

40.418

100

0.411
  comQ Acinetobacter baylyi ADP1

39.046

100

0.392
  pilQ Acinetobacter baumannii D1279779

38.169

100

0.392
  pilQ Acinetobacter baumannii strain A118

38.169

100

0.392

Multiple sequence alignment