Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OC193_RS14345 Genome accession   NZ_AP025476
Coordinates   3178656..3179174 (-) Length   172 a.a.
NCBI ID   WP_048663000.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3173656..3184174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS14330 aroB 3175093..3176181 (-) 1089 WP_048662998.1 3-dehydroquinate synthase -
  OC193_RS14335 aroK 3176207..3176725 (-) 519 WP_017061125.1 shikimate kinase AroK -
  OC193_RS14340 pilQ 3176902..3178596 (-) 1695 WP_048662999.1 type IV pilus secretin PilQ Machinery gene
  OC193_RS14345 pilP 3178656..3179174 (-) 519 WP_048663000.1 pilus assembly protein PilP Machinery gene
  OC193_RS14350 pilO 3179161..3179772 (-) 612 WP_048659164.1 type 4a pilus biogenesis protein PilO Machinery gene
  OC193_RS14355 pilN 3179765..3180364 (-) 600 WP_048663001.1 PilN domain-containing protein Machinery gene
  OC193_RS14360 pilM 3180348..3181373 (-) 1026 WP_048663002.1 type IV pilus assembly protein PilM Machinery gene
  OC193_RS14365 - 3181525..3184086 (+) 2562 WP_048663003.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19025.09 Da        Isoelectric Point: 10.6619

>NTDB_id=91888 OC193_RS14345 WP_048663000.1 3178656..3179174(-) (pilP) [Vibrio crassostreae strain LMG 22240]
MKPNSALYSIVLLLALSGCKANQDSLPDFVAQVETKARKDVEQLVPATEFTAATYQRRAFSPPFELPKEAIVQNQPLVKK
DCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91888 OC193_RS14345 WP_048663000.1 3178656..3179174(-) (pilP) [Vibrio crassostreae strain LMG 22240]
ATGAAACCCAATAGCGCGCTTTACTCAATCGTGTTGCTGCTTGCACTGTCAGGCTGCAAAGCAAATCAGGATTCACTCCC
AGACTTCGTGGCACAGGTTGAAACTAAGGCGAGAAAAGATGTCGAGCAACTTGTCCCAGCAACTGAATTCACGGCGGCGA
CTTATCAGCGCCGAGCCTTTAGTCCTCCCTTTGAACTTCCTAAAGAAGCCATTGTGCAAAACCAGCCTTTGGTTAAGAAA
GACTGTTGGCAACCTAGCGCTCGCTCTCGTAACGGAAAGTTAGAGAAGTACCCGCTGAGTAAGCTTCGTTTAAGAGGTGT
AATGGGCAGTGGTTCAAGTGTGTTTGGGCTAGTGCAAACACCGAAAGGCAACGTGGTAAACGTCAAGAAAGGCCAGTTTA
TCGGCCTAAACAATGGCCGAGTTACTAAGGTGACCAGCCAGTACGTTCAGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

62.577

94.767

0.593
  pilP Vibrio campbellii strain DS40M4

54.438

98.256

0.535

Multiple sequence alignment