Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | OC193_RS14350 | Genome accession | NZ_AP025476 |
| Coordinates | 3179161..3179772 (-) | Length | 203 a.a. |
| NCBI ID | WP_048659164.1 | Uniprot ID | A0A4U1UVD3 |
| Organism | Vibrio crassostreae strain LMG 22240 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3174161..3184772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OC193_RS14330 | aroB | 3175093..3176181 (-) | 1089 | WP_048662998.1 | 3-dehydroquinate synthase | - |
| OC193_RS14335 | aroK | 3176207..3176725 (-) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| OC193_RS14340 | pilQ | 3176902..3178596 (-) | 1695 | WP_048662999.1 | type IV pilus secretin PilQ | Machinery gene |
| OC193_RS14345 | pilP | 3178656..3179174 (-) | 519 | WP_048663000.1 | pilus assembly protein PilP | Machinery gene |
| OC193_RS14350 | pilO | 3179161..3179772 (-) | 612 | WP_048659164.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OC193_RS14355 | pilN | 3179765..3180364 (-) | 600 | WP_048663001.1 | PilN domain-containing protein | Machinery gene |
| OC193_RS14360 | pilM | 3180348..3181373 (-) | 1026 | WP_048663002.1 | type IV pilus assembly protein PilM | Machinery gene |
| OC193_RS14365 | - | 3181525..3184086 (+) | 2562 | WP_048663003.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 23526.93 Da Isoelectric Point: 4.4907
>NTDB_id=91889 OC193_RS14350 WP_048659164.1 3179161..3179772(-) (pilO) [Vibrio crassostreae strain LMG 22240]
MANLQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEQTLKTTLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEQTLKTTLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 612 bp
>NTDB_id=91889 OC193_RS14350 WP_048659164.1 3179161..3179772(-) (pilO) [Vibrio crassostreae strain LMG 22240]
ATGGCTAACCTTCAAAATAGAATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAGTGGCCATTGCTGCCTCAGCT
TCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTAGGCACTTGGCTTTATGTGTTGCCACTCGACGATGAACTGC
AACAGATGAAGCAACAAGAACAAACCTTAAAGACGACCTTGCGAATTAAGGCCAATAAGGTTGCAGCCTTGCCTAAATTG
CAGAGTCAGCTGGATGAACTAACCAGTCGCTACGATTACCTGTTAGAGCAGCTGCCTGTTCAAAAAGAGCTAGCCAGTAT
GTTGGCGTCTGTGAATGAACTCGGCTTGGATAATTCGCTGACCTTTACTCGAATCGATTGGGGACAAAAACAGAACAAGG
AGTTTCTCTATCGTTTACCGCTCAATATCGAGCTGACGGGTGACTACCATGAGATTGGTGACTTTTCGGCTGCCATCGCT
AAGCTGCCGCGCATCATTAGCTTTGATGATGTGAACTGGCAGCGAGTTAGCCAAGAAAGTAGCACTCTGCACTTTAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
ATGGCTAACCTTCAAAATAGAATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAGTGGCCATTGCTGCCTCAGCT
TCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTAGGCACTTGGCTTTATGTGTTGCCACTCGACGATGAACTGC
AACAGATGAAGCAACAAGAACAAACCTTAAAGACGACCTTGCGAATTAAGGCCAATAAGGTTGCAGCCTTGCCTAAATTG
CAGAGTCAGCTGGATGAACTAACCAGTCGCTACGATTACCTGTTAGAGCAGCTGCCTGTTCAAAAAGAGCTAGCCAGTAT
GTTGGCGTCTGTGAATGAACTCGGCTTGGATAATTCGCTGACCTTTACTCGAATCGATTGGGGACAAAAACAGAACAAGG
AGTTTCTCTATCGTTTACCGCTCAATATCGAGCTGACGGGTGACTACCATGAGATTGGTGACTTTTCGGCTGCCATCGCT
AAGCTGCCGCGCATCATTAGCTTTGATGATGTGAACTGGCAGCGAGTTAGCCAAGAAAGTAGCACTCTGCACTTTAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.166 |
95.074 |
0.724 |
| pilO | Vibrio campbellii strain DS40M4 |
72.973 |
91.133 |
0.665 |