Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AB1F75_RS12750 Genome accession   NZ_CP160396
Coordinates   2496115..2497140 (-) Length   341 a.a.
NCBI ID   WP_015252148.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2491115..2502140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS12715 (AB1F75_12715) panEA 2491605..2492501 (-) 897 WP_015252144.1 2-dehydropantoate 2-reductase -
  AB1F75_RS12720 (AB1F75_12720) ylbP 2492661..2493143 (+) 483 WP_014476736.1 N-acetyltransferase -
  AB1F75_RS12725 (AB1F75_12725) gerR 2493195..2493776 (-) 582 WP_044052536.1 sporulation specific transcriptional regulator GerR -
  AB1F75_RS12730 (AB1F75_12730) rpmF 2493922..2494101 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  AB1F75_RS12735 (AB1F75_12735) ylbN 2494123..2494641 (-) 519 WP_015252146.1 DUF177 domain-containing protein -
  AB1F75_RS12740 (AB1F75_12740) - 2494669..2494854 (+) 186 WP_003232215.1 hypothetical protein -
  AB1F75_RS12745 (AB1F75_12745) tmcAL 2494851..2496098 (+) 1248 WP_015252147.1 nucleotidyltransferase -
  AB1F75_RS12750 (AB1F75_12750) sepM 2496115..2497140 (-) 1026 WP_015252148.1 protease DdcP Regulator
  AB1F75_RS12755 (AB1F75_12755) ylbK 2497142..2497924 (-) 783 WP_003232221.1 patatin family protein -
  AB1F75_RS12760 (AB1F75_12760) spoVV 2498105..2499331 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  AB1F75_RS12765 (AB1F75_12765) coaD 2499342..2499827 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB1F75_RS12770 (AB1F75_12770) rsmD 2499832..2500386 (-) 555 WP_015252150.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB1F75_RS12775 (AB1F75_12775) ylbG 2500709..2500981 (-) 273 WP_015715839.1 YlbG family protein -
  AB1F75_RS12780 (AB1F75_12780) ylbF 2501036..2501485 (-) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB1F75_RS12785 (AB1F75_12785) ylbE 2501601..2501840 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37685.25 Da        Isoelectric Point: 6.5347

>NTDB_id=918178 AB1F75_RS12750 WP_015252148.1 2496115..2497140(-) (sepM) [Bacillus subtilis subsp. subtilis strain BSP1]
MLRKKHFSWMVVILILIAFLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=918178 AB1F75_RS12750 WP_015252148.1 2496115..2497140(-) (sepM) [Bacillus subtilis subsp. subtilis strain BSP1]
TTGCTACGTAAAAAACATTTTAGCTGGATGGTCGTCATCCTCATACTGATCGCCTTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(36-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399