Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV20_RS01240 Genome accession   NZ_AP025470
Coordinates   275600..277318 (+) Length   572 a.a.
NCBI ID   WP_086774522.1    Uniprot ID   -
Organism   Vibrio coralliirubri strain DSM 27495     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270600..282318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS01220 pilM 272847..273872 (+) 1026 WP_086774526.1 type IV pilus assembly protein PilM Machinery gene
  OCV20_RS01225 pilN 273856..274455 (+) 600 WP_086774525.1 PilN domain-containing protein Machinery gene
  OCV20_RS01230 pilO 274448..275059 (+) 612 WP_086774524.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV20_RS01235 pilP 275046..275564 (+) 519 WP_086774523.1 pilus assembly protein PilP Machinery gene
  OCV20_RS01240 pilQ 275600..277318 (+) 1719 WP_086774522.1 type IV pilus secretin PilQ Machinery gene
  OCV20_RS01245 aroK 277495..278013 (+) 519 WP_017061125.1 shikimate kinase AroK -
  OCV20_RS01250 aroB 278039..279127 (+) 1089 WP_017061124.1 3-dehydroquinate synthase -
  OCV20_RS01255 - 279207..280724 (+) 1518 WP_086774521.1 SPOR domain-containing protein -
  OCV20_RS01260 - 280794..281642 (+) 849 WP_048605377.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62033.75 Da        Isoelectric Point: 4.3871

>NTDB_id=91773 OCV20_RS01240 WP_086774522.1 275600..277318(+) (pilQ) [Vibrio coralliirubri strain DSM 27495]
MIKGISGLVSKALQGFAVSVMLVVSVLSHAESLPNKLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELINTQ
VDDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATISNDYQYEYNLKGRFIEVVISKPVIDEATKEKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSAITPYDDDSGSSVIDDYLNVNLGATSPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=91773 OCV20_RS01240 WP_086774522.1 275600..277318(+) (pilQ) [Vibrio coralliirubri strain DSM 27495]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTTGTTAGCGTGCT
CAGCCATGCCGAGAGCTTACCGAACAAATTAGAGAATATTGATTTTAGGGTGAACAAGGATAAAGACGCCGTCATCATTA
TTGAGCTGGCGACCAGCACCGCAGTGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAGCTAATCAATACTCAG
GTTGATGATGACAAGCTCTACCTGCTGGATGTTAAGGATTTCGCTACCTTGGTTGAAGGCATTGAAGTCTACAAAGAGAC
ACCAAGCACTCGGCTTCTAGCGACGATTAGCAATGACTATCAGTATGAGTACAACCTAAAGGGGCGCTTTATTGAGGTGG
TGATCAGCAAACCGGTGATCGATGAAGCGACCAAAGAAAAAAGCGTTCTAGAGAAAGAGGGCAAGCTGATATCGATTAAC
TTCCAGGATATCCCAGTACGAAATGTCCTGCAGTTGATTGCCGACTACAACGACTTCAATCTCGTGGTGTCTGATTCGGT
AGCCGGAAACCTGACGTTACGCTTAGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTGG
ATAAGCGTGTTGATGGCAATGTTATCTTGGTCGCACCGAAAGCGGAGCTCGACCTTCGAGAGCAACAAGCGTTAGAGAAA
TCGCGCTTAGAAGAAGAGTTAGGGGAGCTTAAATCGGAAATCATCAAGATTAACTTTGCTAAGGCCACCGACATTGCTGA
CATGATTGGCGGTGAAGGTGCGGTCAGCATGTTGTCCGATCGTGGTTCAATTACCATTGATGAGCGCACCAACTCACTGC
TTATTCGTGAATTGGAAGAAAACATTGCCGTGATCAGAGGCATCATTGAATCGTTAGACATTCCCGTGAAGCAGGTACAG
ATAGAGGCACGTATTGTCACTGTTACCGAGGGTAACCTAGATGAGCTTGGCGTGCGCTGGGGCGTTTCATCAACCAACGG
AAGCTTCACCGTTGGTGGTTCAATCGAAGGCAACCACCCATCAGCTATTACGCCGTATGACGACGATAGCGGCAGCAGCG
TGATTGATGACTATCTCAACGTCAATTTAGGGGCAACATCGCCGAACGCCTCGAGTATTGCGTTTCAGGTGGCTAAGCTG
GGCTCAGATACCTTACTCGATCTTGAACTGTCAGCACTGCAACAAGAGTCAAAAGCTGAAATCATTTCCAGCCCACGCTT
AATCACCACCAATAAAAAGCCGGCTTATATTGAGCAAGGTACTGAAATTCCTTACTTAGAGTCATCTTCAAGTGGCGCTA
CGTCGGTCGCATTTAAGAAAGCGGTATTGAGTCTTAAGGTGACACCGCAGATCACACCCGACAATCGCTTGGTCTTGGAT
TTGAGCGTGACTCAAGATAGGCCAGGGCAAGTGGTAAAAACCGGAACTGGTGAAGCAGTCGCCATTGATACGCAAAGAAT
AGGTACGCAAGTGCTTGTTAATAATGGTGAAACTGTCGTGCTTGGCGGGATATTTCAGCACAGCGTGAGCAGTACAGTGG
ATAAAGTTCCTCTGTTGGGAGACCTGCCAGTTTTGGGTGCATTGTTCCGTCGCAGCTATGAAAATGTGGGTAAAAGTGAA
CTACTTATTTTTGTCACACCCAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.526

100

0.778
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.526

100

0.778
  pilQ Vibrio campbellii strain DS40M4

81.066

95.105

0.771
  pilQ Legionella pneumophila strain Lp02

42.857

95.455

0.409
  pilQ Legionella pneumophila strain ERS1305867

42.857

95.455

0.409
  pilQ Pseudomonas aeruginosa PAK

40.754

97.378

0.397
  comQ Acinetobacter baylyi ADP1

38.957

100

0.392
  pilQ Acinetobacter baumannii strain A118

37.651

100

0.381
  pilQ Acinetobacter baumannii D1279779

37.651

100

0.381

Multiple sequence alignment