Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   U7118_RS02555 Genome accession   NZ_CP141283
Coordinates   476943..477284 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain DKU_09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471943..482284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS02515 (U7118_02515) rapD 472073..473137 (-) 1065 WP_015251038.1 aspartate phosphatase RapD -
  U7118_RS02520 (U7118_02520) fabZ 473329..473754 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  U7118_RS02525 (U7118_02525) mscL 473827..474222 (+) 396 WP_213783478.1 large conductance mechanosensitive channel protein MscL -
  U7118_RS02530 (U7118_02530) ywpD 474270..475106 (-) 837 WP_014481147.1 sensor histidine kinase -
  U7118_RS22460 - 475140..475292 (+) 153 Protein_504 prealbumin-like fold domain-containing protein -
  U7118_RS02540 (U7118_02540) - 475366..475758 (+) 393 Protein_505 class A sortase -
  U7118_RS02545 (U7118_02545) ywpF 475898..476308 (-) 411 WP_014481144.1 YwpF-like family protein -
  U7118_RS02550 (U7118_02550) ywpG 476483..476866 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  U7118_RS02555 (U7118_02555) ssbB 476943..477284 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  U7118_RS02560 (U7118_02560) glcR 477508..478284 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  U7118_RS02565 (U7118_02565) ywpJ 478290..479147 (+) 858 WP_264099334.1 phosphatase YwpJ -
  U7118_RS02570 (U7118_02570) hepAB 479273..482041 (-) 2769 WP_041337864.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=916793 U7118_RS02555 WP_003227798.1 476943..477284(+) (ssbB) [Bacillus subtilis strain DKU_09]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=916793 U7118_RS02555 WP_003227798.1 476943..477284(+) (ssbB) [Bacillus subtilis strain DKU_09]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389