Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV30_RS14190 Genome accession   NZ_AP025460
Coordinates   3136953..3138671 (-) Length   572 a.a.
NCBI ID   WP_017103612.1    Uniprot ID   -
Organism   Vibrio atlanticus strain CECT 7223     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3131953..3143671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS14170 - 3132618..3133478 (-) 861 WP_012604942.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCV30_RS14175 - 3133548..3135065 (-) 1518 WP_065679724.1 SPOR domain-containing protein -
  OCV30_RS14180 aroB 3135145..3136233 (-) 1089 WP_009848908.1 3-dehydroquinate synthase -
  OCV30_RS14185 aroK 3136258..3136776 (-) 519 WP_009848907.1 shikimate kinase AroK -
  OCV30_RS14190 pilQ 3136953..3138671 (-) 1719 WP_017103612.1 type IV pilus secretin PilQ Machinery gene
  OCV30_RS14195 pilP 3138707..3139225 (-) 519 WP_065679725.1 pilus assembly protein PilP Machinery gene
  OCV30_RS14200 pilO 3139212..3139841 (-) 630 WP_012604947.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV30_RS14205 pilN 3139834..3140448 (-) 615 WP_065679726.1 PilN domain-containing protein Machinery gene
  OCV30_RS14210 pilM 3140432..3141457 (-) 1026 WP_065679727.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62266.04 Da        Isoelectric Point: 4.4058

>NTDB_id=91661 OCV30_RS14190 WP_017103612.1 3136953..3138671(-) (pilQ) [Vibrio atlanticus strain CECT 7223]
MIKGLSKLINKGLQSLVVSVMLVVSVFSYAESLPNQLENIDFRVNKEKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VNDDKLYLLDVKDFATSVEGIEVYKETPSTRLLATIAGDYQYEYNLKGRFIEVVISRPTIDEVTIEKNVLEKEGKVISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=91661 OCV30_RS14190 WP_017103612.1 3136953..3138671(-) (pilQ) [Vibrio atlanticus strain CECT 7223]
ATGATTAAAGGACTAAGTAAGTTAATAAACAAAGGGCTGCAAAGCCTAGTTGTGTCTGTGATGTTGGTGGTTAGCGTGTT
CAGCTATGCCGAGAGCTTGCCAAATCAATTGGAAAATATTGATTTTAGGGTCAACAAGGAGAAAGACGCCGTCATCATTA
TCGAATTGGCAACCAGCACTGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGTTTAAGTATCGAGTTACTCAATACTCAG
GTGAATGACGATAAGCTTTACCTCCTGGATGTGAAGGACTTCGCGACCTCAGTTGAAGGTATTGAGGTGTATAAGGAAAC
GCCCAGTACGCGATTGTTGGCAACGATCGCTGGTGACTATCAATATGAATACAACTTAAAAGGTCGCTTTATTGAGGTAG
TGATCAGTAGGCCTACTATTGATGAAGTGACAATAGAGAAAAATGTTTTAGAAAAAGAAGGCAAGGTGATATCGATTAAC
TTCCAAGATATCCCTGTACGTAATGTTTTGCAGCTTATTGCTGATTACAACGATTTCAATCTCGTTGTTTCTGATTCAGT
CACGGGTAATCTGACTTTACGTTTAGATGGTGTGCCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAGGGATTGG
ATAAGCGTGTTGATGGCAACGTTATCTTGGTGGCACCTAAAGCTGAGCTCGACCTTAGAGAGCAACAAGCGCTAGAGAAA
TCTCGTTTGGAAGAAGAGCTAGGTGAACTCAAGTCGGAAATCATCAAGATTAACTTTGCCAAAGCCACCGACATTGCCGA
CATGATTGGTGGGGAAGGGGCGGTAAGCATGTTGTCCGAGCGAGGCTCGATTACCATTGATGAGCGAACTAACTCCCTGT
TGATCCGTGAATTGGAAGAAAACATTGCGGTGATACGAGGTATTATTGAATCGCTAGACATTCCCGTGAAGCAAGTTCAG
ATAGAAGCACGTATTGTCACTGTTACTGAGGGTAATCTTGATGAACTAGGAGTGCGTTGGGGCGTTTCCTCGACCAACGG
AAGCTTTAAAGTTGGCGGCTCGATAGAGGGCAACCATCCATCGCAAATTACACCGTATGACGATAATGGTGGGAATAGTG
CGATTGACGATTTCCTCAACGTTAATTTAGGAGCAACTTCCCCGAGCGCGTCGAGTATTGCGTTTCAGGTAGCCAAGCTG
GGTTCTGATACCTTGCTTGATCTTGAATTGTCAGCACTGCAACAAGAGTCGAAAGCAGAGATTATTTCTAGCCCACGCTT
AATTACCACCAATAAAAAACCCGCTTATATTGAGCAAGGTACTGAAATCCCTTATTTAGAGTCTTCTTCAAGTGGTGCTA
CTTCAGTCGCATTTAAGAAAGCGGTATTGAGTCTCAAGGTGACTCCGCAGATCACACCCGACAATCGTTTGGTATTGGAT
TTGAGCGTGACTCAAGATAGGCCGGGGCAAGTGGTGAAAACCGGCACCGGTGAAGCTGTCGCTATTGATACGCAAAGAAT
TGGAACGCAAGTACTTGTTAATAATGGTGAAACGGTCGTGTTAGGTGGTATTTTTCAACACAGTGTGAGCAGCCAAGTTG
ATAAAGTTCCACTGTTAGGAGACCTTCCTGTTCTTGGCGCATTGTTCCGTCGTAGCTATGAAAATGTAGGCAAAAGTGAA
CTACTTATTTTTGTTACACCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Bacterial type II and III secretion system protein (Secretin)

(412-570)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

78.049

100

0.783
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.049

100

0.783
  pilQ Vibrio campbellii strain DS40M4

78.843

96.678

0.762
  pilQ Legionella pneumophila strain ERS1305867

42.674

95.455

0.407
  pilQ Legionella pneumophila strain Lp02

42.674

95.455

0.407
  pilQ Pseudomonas aeruginosa PAK

41.113

97.378

0.4
  comQ Acinetobacter baylyi ADP1

39.576

98.951

0.392
  pilQ Acinetobacter baumannii D1279779

38.169

100

0.386
  pilQ Acinetobacter baumannii strain A118

38.169

100

0.386

Multiple sequence alignment