Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   U6I89_RS18940 Genome accession   NZ_CP141263
Coordinates   3730287..3730628 (-) Length   113 a.a.
NCBI ID   WP_003235640.1    Uniprot ID   A0A9Q4EUF4
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3725287..3735628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS18925 (U6I89_18925) - 3725534..3728302 (+) 2769 WP_060399660.1 DEAD/DEAH box helicase -
  U6I89_RS18930 (U6I89_18930) - 3728430..3729287 (-) 858 WP_060399661.1 Cof-type HAD-IIB family hydrolase -
  U6I89_RS18935 (U6I89_18935) glcR 3729293..3730069 (-) 777 WP_104010200.1 transcriptional regulator GlcR -
  U6I89_RS18940 (U6I89_18940) ssbB 3730287..3730628 (-) 342 WP_003235640.1 single-stranded DNA-binding protein SsbB Machinery gene
  U6I89_RS18945 (U6I89_18945) - 3730705..3731088 (-) 384 WP_019259681.1 hypothetical protein -
  U6I89_RS18950 (U6I89_18950) - 3731264..3731674 (+) 411 WP_032731815.1 YwpF-like family protein -
  U6I89_RS18955 (U6I89_18955) blaOXA 3731696..3732499 (+) 804 WP_060399663.1 class D beta-lactamase -
  U6I89_RS18960 (U6I89_18960) - 3732572..3733228 (-) 657 WP_060399664.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12506.16 Da        Isoelectric Point: 7.8150

>NTDB_id=916585 U6I89_RS18940 WP_003235640.1 3730287..3730628(-) (ssbB) [Bacillus inaquosorum strain BIM B-2002]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKTAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=916585 U6I89_RS18940 WP_003235640.1 3730287..3730628(-) (ssbB) [Bacillus inaquosorum strain BIM B-2002]
ATGTTCAATCAGGTCATGCTAGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACGCTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGGCGGATCCAGACAAGG
AGCTATGAAAACGCAGAAGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGATACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAACGGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398