Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U6037_RS24700 Genome accession   NZ_CP140706
Coordinates   5597823..5599040 (+) Length   405 a.a.
NCBI ID   WP_322844843.1    Uniprot ID   -
Organism   Pseudomonas sp. B33.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5592823..5604040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6037_RS24675 - 5594241..5594537 (+) 297 WP_322844840.1 DUF2845 domain-containing protein -
  U6037_RS24685 - 5594807..5595160 (-) 354 WP_150650535.1 BON domain-containing protein -
  U6037_RS24690 pilA/pilAI 5595457..5595894 (-) 438 WP_322844841.1 pilin Machinery gene
  U6037_RS24695 pilB 5596120..5597820 (+) 1701 WP_322844842.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U6037_RS24700 pilC 5597823..5599040 (+) 1218 WP_322844843.1 type II secretion system F family protein Machinery gene
  U6037_RS24705 pilD 5599042..5599914 (+) 873 WP_322844844.1 A24 family peptidase Machinery gene
  U6037_RS24710 coaE 5599911..5600534 (+) 624 WP_322844845.1 dephospho-CoA kinase -
  U6037_RS24715 yacG 5600531..5600731 (+) 201 WP_007959585.1 DNA gyrase inhibitor YacG -
  U6037_RS24720 - 5600738..5600953 (-) 216 WP_008078491.1 hypothetical protein -
  U6037_RS24725 - 5601019..5601708 (-) 690 WP_322844846.1 energy-coupling factor ABC transporter permease -
  U6037_RS24730 - 5601827..5602453 (+) 627 WP_008078503.1 DUF1780 domain-containing protein -
  U6037_RS24735 - 5602450..5602977 (+) 528 WP_322844847.1 MOSC domain-containing protein -
  U6037_RS24740 - 5603029..5603202 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44074.82 Da        Isoelectric Point: 10.1093

>NTDB_id=915044 U6037_RS24700 WP_322844843.1 5597823..5599040(+) (pilC) [Pseudomonas sp. B33.4]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSLLSLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ERLKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALIAAIFGTR
HALKTSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDEMLDKVAGFYEEEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=915044 U6037_RS24700 WP_322844843.1 5597823..5599040(+) (pilC) [Pseudomonas sp. B33.4]
ATGGCGGTCAAGGCAGCGAAAATCAGTATCTACGCCTGGGAAGGTACGGACAGGAAAGGCAGCAAAGTCACCGGCGAGCT
GAGCGGACAGAACCCGGCGCTGATCAAGGCACAACTGCGCAAGCAGGGGATCAATCCCGGCAAGGTGCGCAAAAAATCCA
CATCGTTGTTGAGCTTGGGCAAACGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACCATGATGAAG
GCCGGCGTGCCTTTGTTGCAGTCGTTCGACATCATCGGCGAAGGCTTTGAAAACCCGGCCATGCGCAAGCTGGTAGACGA
GGTCAAACAGGAGGTCGCGGCGGGTAACAGTTTCGCCGCGGCCCTGCGCAAGAAGCCGCAGTATTTCGACGAGTTGTACT
GCAACCTGGTCGATGCCGGCGAGCAGTCCGGCGCCCTCGATACGTTGCTCGAACGCGTGGCAACCTATAAGGAAAAAAGC
GAGCGCCTCAAGGCCAAGATCAAAAAAGCCATGACCTACCCCACCGCCGTCGTGCTGGTCGCAGCGGTGGTGACCGGGAT
TCTGCTGGTTAAAGTAGTGCCGCAATTCCAGTCGGTATTCTCGGGGTTCGGCGCCGAGTTACCGGCCTTCACCCTGATGG
TGATCAGCCTTTCGGAATTCATGCAGCAATGGTGGTGGGCGATTCTTGGTGCACTGATCGCGGCGATTTTCGGCACTCGC
CATGCACTGAAAACGTCTCAGGCATTGCGCGATCGCAAAGACACCTGGCTGTTGAAACTGCCATTGGTGGGCACGCTGAT
GTACAAGTCCGCCGTGGCGCGATTTGCCCGAACCCTTTCCACTACTTTCGCCGCCGGTGTGCCGCTGGTGGAAGCGCTGG
ACTCGGTGGCAGGCGCCACGGGCAACGTGGTGTTCAAACGCGCAGTGCTGCGGATTCGCCAGGACGTCTCGACCGGCATG
CAGCTGAATTTCTCGATGCGCAGCACCGGGGTCTTTCCCAATATGGCCGTGCAGATGACGGCGATTGGCGAAGAGTCCGG
CGCGCTGGACGAAATGCTCGACAAGGTCGCGGGGTTTTATGAGGAGGAAGTGGATAACATGGTCGACAATCTCACCAGCC
TCATGGAGCCGTTCATCATGGTCGTGCTGGGGGTGATCGTCGGCGGGCTGGTGGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baylyi ADP1

59.559

100

0.6
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilC Vibrio cholerae strain A1552

44.697

97.778

0.437
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.903

99.012

0.385