Detailed information NTG0915045

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U6037_RS24705
• Genome accession: NZ_CP140706
• Coordinates: 5599042..5599914 (+)
• Length: 290 a.a.
• NCBI ID: WP_322844844.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B33.4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5594042..5604914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6037_RS24675	-	5594241..5594537 (+)	297	WP_322844840.1	DUF2845 domain-containing protein	-
U6037_RS24685	-	5594807..5595160 (-)	354	WP_150650535.1	BON domain-containing protein	-
U6037_RS24690	pilA/pilAI	5595457..5595894 (-)	438	WP_322844841.1	pilin	Machinery gene
U6037_RS24695	pilB	5596120..5597820 (+)	1701	WP_322844842.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U6037_RS24700	pilC	5597823..5599040 (+)	1218	WP_322844843.1	type II secretion system F family protein	Machinery gene
U6037_RS24705	pilD	5599042..5599914 (+)	873	WP_322844844.1	A24 family peptidase	Machinery gene
U6037_RS24710	coaE	5599911..5600534 (+)	624	WP_322844845.1	dephospho-CoA kinase	-
U6037_RS24715	yacG	5600531..5600731 (+)	201	WP_007959585.1	DNA gyrase inhibitor YacG	-
U6037_RS24720	-	5600738..5600953 (-)	216	WP_008078491.1	hypothetical protein	-
U6037_RS24725	-	5601019..5601708 (-)	690	WP_322844846.1	energy-coupling factor ABC transporter permease	-
U6037_RS24730	-	5601827..5602453 (+)	627	WP_008078503.1	DUF1780 domain-containing protein	-
U6037_RS24735	-	5602450..5602977 (+)	528	WP_322844847.1	MOSC domain-containing protein	-
U6037_RS24740	-	5603029..5603202 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
U6037_RS24745	-	5603269..5604567 (+)	1299	WP_016986237.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32152.36 Da
• Isoelectric Point: 7.3794

>NTDB_id=915045 U6037_RS24705 WP_322844844.1 5599042..5599914(+) (pilD) [Pseudomonas sp. B33.4]
MPIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGDAPQPTYNLMLPHSECPHCAHRIR
PWENIPLLSYLCLRGRCSACAAPISKRYPLTELACGLLSAFIAWHLGSGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLRNEKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=915045 U6037_RS24705 WP_322844844.1 5599042..5599914(+) (pilD) [Pseudomonas sp. B33.4]
ATGCCTATCGACGAACTGTTTGCCCTGTACCCGCTGGCCTTTGTCTTCACTGCCCTGTTGCTCGGCCTGGTGGTCGGCAG
CTTCCTCAACGTCCTGATCTGGCGTCTGCCGAAAATGCTTGAGCGCGACTGGCGCCAGCAGGCCCACGATGTGCTCGGCT
TGCCCGGCGATGCGCCGCAACCGACCTACAACCTGATGTTGCCGCACTCCGAATGCCCACATTGCGCCCATCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGCTATCTGTGCCTGCGCGGGCGTTGTTCTGCATGTGCTGCCCCCATCAGCAAACG
TTATCCGCTGACCGAGCTGGCCTGTGGCTTGCTCTCGGCATTCATCGCCTGGCATCTCGGGTCTGGCTGGCCGGCGTGCC
TGCTGATTGTCCTCACCTGGGGGTTGCTGGCGATGAGCCTGATCGACACCGAACATCAATTGCTCCCTGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTATCGTTGCACGATGCGCTGTGGGGCGCGGT
AGCCGGTTACCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAACTGTTGGCGCTGCTTGGCGCGTGGGGTGGCTGGCAGATTTTGCCGCTGACCATCCTGCTGTCATCGCTGGTGGGC
GCCATAGTCGGGGTGATTTTGCTCCGCTTGCGTAATGAGAAAACATCGACTCCCATTCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.965	97.241	0.534
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	48.601	98.621	0.479
pilD	Acinetobacter nosocomialis M2	48.601	98.621	0.479
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455