Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   L6430_RS04065 Genome accession   NZ_AP025342
Coordinates   790284..790631 (-) Length   115 a.a.
NCBI ID   WP_065644224.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 785284..795631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS04035 srlD 785894..786679 (-) 786 WP_065644230.1 sorbitol-6-phosphate dehydrogenase -
  L6430_RS04040 - 786694..787065 (-) 372 WP_065644229.1 PTS glucitol/sorbitol transporter subunit IIA -
  L6430_RS04045 srlE 787089..788096 (-) 1008 WP_065644228.1 PTS glucitol/sorbitol transporter subunit IIB -
  L6430_RS04050 srlA 788113..788661 (-) 549 WP_065644227.1 PTS glucitol/sorbitol transporter subunit IIC -
  L6430_RS04055 - 788658..789101 (-) 444 WP_065644226.1 transcriptional regulator GutM -
  L6430_RS04060 - 789098..790060 (-) 963 WP_065644225.1 sugar-binding transcriptional regulator -
  L6430_RS04065 ssbB 790284..790631 (-) 348 WP_065644224.1 single-stranded DNA-binding protein Machinery gene
  L6430_RS04070 - 790736..791107 (-) 372 WP_020453205.1 hypothetical protein -
  L6430_RS04075 - 791289..791702 (+) 414 WP_020453206.1 YwpF-like family protein -
  L6430_RS04080 mscL 791742..792122 (-) 381 WP_020453207.1 large conductance mechanosensitive channel protein MscL -
  L6430_RS04085 fabZ 792192..792626 (-) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L6430_RS04090 - 792804..793631 (-) 828 WP_023857130.1 flagellar hook-basal body protein -
  L6430_RS04095 - 793674..794513 (-) 840 WP_065644223.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12794.50 Da        Isoelectric Point: 6.9543

>NTDB_id=91444 L6430_RS04065 WP_065644224.1 790284..790631(-) (ssbB) [Bacillus paralicheniformis strain J41TS8]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVNRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFTTEVVARSVRFLGESRKAHEPAEA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=91444 L6430_RS04065 WP_065644224.1 790284..790631(-) (ssbB) [Bacillus paralicheniformis strain J41TS8]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACTAAAGATCCCGAACTTCGGTACACTTCTGACGGTGTCCCTGTTGC
AAATGTGACACTGGCTGTCAACAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTCT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCGTCTTTACTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGGCGGAAGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

73.786

89.565

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.165

89.565

0.548
  ssb Latilactobacillus sakei subsp. sakei 23K

53.153

96.522

0.513
  ssbA Streptococcus mutans UA159

46.729

93.043

0.435
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.86

93.043

0.417
  ssbB Lactococcus lactis subsp. cremoris KW2

44.34

92.174

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

43.925

93.043

0.409
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.925

93.043

0.409
  ssbB/cilA Streptococcus pneumoniae Rx1

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae D39

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae R6

42.991

93.043

0.4
  ssbB/cilA Streptococcus mitis SK321

42.991

93.043

0.4

Multiple sequence alignment