Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   L6432_RS13470 Genome accession   NZ_AP025339
Coordinates   2682004..2682351 (-) Length   115 a.a.
NCBI ID   WP_020453204.1    Uniprot ID   A0AAW6K4M3
Organism   Bacillus paralicheniformis strain J25TS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2677004..2687351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS13440 srlD 2677618..2678403 (-) 786 WP_023857135.1 sorbitol-6-phosphate dehydrogenase -
  L6432_RS13445 - 2678418..2678789 (-) 372 WP_020453199.1 PTS glucitol/sorbitol transporter subunit IIA -
  L6432_RS13450 srlE 2678813..2679820 (-) 1008 WP_020453200.1 PTS glucitol/sorbitol transporter subunit IIB -
  L6432_RS13455 srlA 2679837..2680385 (-) 549 WP_020453201.1 PTS glucitol/sorbitol transporter subunit IIC -
  L6432_RS13460 - 2680382..2680825 (-) 444 WP_023857134.1 transcriptional regulator GutM -
  L6432_RS13465 - 2680822..2681784 (-) 963 WP_020453203.1 sugar-binding transcriptional regulator -
  L6432_RS13470 ssbB 2682004..2682351 (-) 348 WP_020453204.1 single-stranded DNA-binding protein Machinery gene
  L6432_RS13475 - 2682456..2682827 (-) 372 WP_023857133.1 hypothetical protein -
  L6432_RS13480 - 2683009..2683422 (+) 414 WP_020453206.1 YwpF-like family protein -
  L6432_RS13485 mscL 2683462..2683842 (-) 381 WP_023857132.1 large conductance mechanosensitive channel protein MscL -
  L6432_RS13490 fabZ 2683913..2684347 (-) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L6432_RS13495 - 2684529..2685356 (-) 828 WP_023857130.1 flagellar hook-basal body protein -
  L6432_RS13500 - 2685400..2686239 (-) 840 WP_023857129.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12795.52 Da        Isoelectric Point: 6.9543

>NTDB_id=91339 L6432_RS13470 WP_020453204.1 2682004..2682351(-) (ssbB) [Bacillus paralicheniformis strain J25TS1]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFITEVVARSVRFLGESRKAHEPSEA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=91339 L6432_RS13470 WP_020453204.1 2682004..2682351(-) (ssbB) [Bacillus paralicheniformis strain J25TS1]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGATCCCGAACTTCGGTACACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTGT
GGCGCAAAACTGCCGTGAATACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACTCGC
CAATACGTCAATTCAGAAGGCGAACGCGTCTTTATTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGTCGGAAGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

72.816

89.565

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.194

89.565

0.539
  ssb Latilactobacillus sakei subsp. sakei 23K

52.252

96.522

0.504
  ssbA Streptococcus mutans UA159

45.794

93.043

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

44.34

92.174

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.925

93.043

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.043

0.391
  ssbB/cilA Streptococcus mitis SK321

42.056

93.043

0.391

Multiple sequence alignment