Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   UM396_RS16585 Genome accession   NZ_CP139723
Coordinates   3221419..3221766 (-) Length   115 a.a.
NCBI ID   WP_063167257.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3216419..3226766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS16570 (UM396_16570) - 3218320..3219948 (-) 1629 WP_322310576.1 peptidoglycan-binding protein -
  UM396_RS16575 (UM396_16575) - 3220164..3220661 (-) 498 WP_082816505.1 hypothetical protein -
  UM396_RS16580 (UM396_16580) - 3220877..3221287 (+) 411 WP_063164693.1 helix-turn-helix domain-containing protein -
  UM396_RS16585 (UM396_16585) ssbB 3221419..3221766 (-) 348 WP_063167257.1 single-stranded DNA-binding protein Machinery gene
  UM396_RS16590 (UM396_16590) - 3222050..3222490 (+) 441 WP_063164692.1 YwpF-like family protein -
  UM396_RS16595 (UM396_16595) - 3222605..3223276 (-) 672 WP_063164691.1 class D sortase -
  UM396_RS16600 (UM396_16600) - 3223300..3224235 (-) 936 WP_409071352.1 processed acidic surface protein -
  UM396_RS16605 (UM396_16605) - 3224380..3225756 (-) 1377 WP_063164689.1 aspartate kinase -
  UM396_RS16610 (UM396_16610) - 3225907..3226341 (-) 435 WP_063164688.1 DUF1284 domain-containing protein -
  UM396_RS16615 (UM396_16615) - 3226534..3226671 (-) 138 WP_156485815.1 hypothetical protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12878.63 Da        Isoelectric Point: 9.0821

>NTDB_id=910740 UM396_RS16585 WP_063167257.1 3221419..3221766(-) (ssbB) [Geobacillus subterraneus strain OXR-76]
MINQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNAEGGVDADFIPCVLWRKTAEHTANYCRKGSMVAVTGRIQTR
RYDNKDGQRVYVTEVVADSVQFLHSGKAREWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=910740 UM396_RS16585 WP_063167257.1 3221419..3221766(-) (ssbB) [Geobacillus subterraneus strain OXR-76]
ATGATCAATCAAGTCGTACTTGTCGGCCGGTTGACGAAGGACCCGGAGCTTCGCTACACGGCCGAGGGGGCGGCCGTGAC
AACCGTTACGCTGGCGGTAGCGAGAAATTTTCGCAATGCGGAAGGGGGGGTTGATGCCGATTTCATTCCGTGTGTTTTAT
GGCGGAAAACGGCGGAACATACCGCCAATTACTGCCGAAAAGGATCAATGGTGGCGGTAACGGGAAGAATTCAGACGCGC
CGCTATGACAATAAAGATGGCCAGCGCGTCTATGTGACCGAAGTCGTCGCCGATTCCGTTCAGTTTCTCCACTCCGGCAA
AGCGCGGGAATGGCCGGAGCATGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.455

95.652

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

90.435

0.591
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

91.304

0.574
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.491

99.13

0.461
  ssbA Streptococcus mutans UA159

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

42.105

99.13

0.417
  ssbB/cilA Streptococcus mitis SK321

42.105

99.13

0.417
  ssbB/cilA Streptococcus pneumoniae D39

42.105

99.13

0.417
  ssbB/cilA Streptococcus pneumoniae R6

42.105

99.13

0.417
  ssbB Lactococcus lactis subsp. cremoris KW2

43.269

90.435

0.391