Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SM123_RS09885 Genome accession   NZ_CP139419
Coordinates   2045532..2045927 (-) Length   131 a.a.
NCBI ID   WP_003004675.1    Uniprot ID   A0A930RSB0
Organism   Streptococcus lingualis strain S5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2040532..2050927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS09865 (SM123_09865) - 2041060..2042358 (-) 1299 WP_320909530.1 sugar ABC transporter substrate-binding protein -
  SM123_RS09870 (SM123_09870) - 2042355..2043038 (-) 684 WP_037585171.1 response regulator transcription factor -
  SM123_RS09875 (SM123_09875) - 2043044..2044360 (-) 1317 WP_247923532.1 sensor histidine kinase -
  SM123_RS09880 (SM123_09880) - 2044360..2045343 (-) 984 WP_049492166.1 substrate-binding domain-containing protein -
  SM123_RS09885 (SM123_09885) ssbB/cilA 2045532..2045927 (-) 396 WP_003004675.1 single-stranded DNA-binding protein Machinery gene
  SM123_RS09890 (SM123_09890) ytpR 2046029..2046655 (-) 627 WP_003013664.1 YtpR family tRNA-binding protein -
  SM123_RS09895 (SM123_09895) - 2046665..2046982 (-) 318 WP_070661098.1 thioredoxin family protein -
  SM123_RS09900 (SM123_09900) - 2046979..2047269 (-) 291 WP_045759005.1 DUF4651 domain-containing protein -
  SM123_RS09905 (SM123_09905) pepA 2047412..2048476 (+) 1065 WP_014712788.1 glutamyl aminopeptidase -
  SM123_RS09910 (SM123_09910) - 2048923..2050407 (+) 1485 WP_021154294.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14771.80 Da        Isoelectric Point: 5.9328

>NTDB_id=909564 SM123_RS09885 WP_003004675.1 2045532..2045927(-) (ssbB/cilA) [Streptococcus lingualis strain S5]
MYNKVILIGRLVAAPELHKTSTDKSVARVTVAVNRRYKDQNGERETDFVNVVVWGKLAETMASYASKGSLISLDGEIRTR
RYEKNGVMQYVTEVLCQSFQLLESRAQRAMRENGGTGDLADIILEEEDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=909564 SM123_RS09885 WP_003004675.1 2045532..2045927(-) (ssbB/cilA) [Streptococcus lingualis strain S5]
ATGTATAATAAAGTTATTTTAATCGGTCGCCTGGTGGCGGCTCCAGAATTGCATAAGACCAGCACAGACAAATCCGTTGC
CCGAGTGACCGTTGCGGTCAATCGTCGCTACAAGGACCAAAACGGGGAGCGAGAGACTGATTTTGTCAATGTCGTTGTCT
GGGGGAAATTGGCTGAAACCATGGCTAGTTATGCCAGTAAAGGGAGCTTGATCTCTTTGGATGGAGAGATTCGGACACGC
CGCTACGAGAAAAATGGGGTCATGCAGTATGTGACAGAGGTCCTCTGCCAAAGTTTTCAGTTGCTAGAGAGCCGCGCTCA
GCGAGCGATGCGTGAAAATGGTGGAACGGGAGATTTAGCCGATATCATCTTAGAAGAGGAAGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

59.292

86.26

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

44.828

88.55

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382