Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SH592_RS17240 Genome accession   NZ_CP139053
Coordinates   3546470..3546811 (-) Length   113 a.a.
NCBI ID   WP_039253548.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3541470..3551811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH592_RS17225 (SH592_17225) - 3541738..3544512 (+) 2775 WP_033574409.1 DEAD/DEAH box helicase -
  SH592_RS17230 (SH592_17230) - 3544625..3545482 (-) 858 WP_039063770.1 Cof-type HAD-IIB family hydrolase -
  SH592_RS17235 (SH592_17235) - 3545479..3546261 (-) 783 WP_039253550.1 DeoR/GlpR family DNA-binding transcription regulator -
  SH592_RS17240 (SH592_17240) ssbB 3546470..3546811 (-) 342 WP_039253548.1 single-stranded DNA-binding protein Machinery gene
  SH592_RS17245 (SH592_17245) - 3546909..3547262 (-) 354 WP_040238779.1 hypothetical protein -
  SH592_RS17250 (SH592_17250) - 3547435..3547845 (+) 411 WP_012118638.1 YwpF-like family protein -
  SH592_RS17255 (SH592_17255) mscL 3547891..3548286 (-) 396 WP_040238777.1 large conductance mechanosensitive channel protein MscL -
  SH592_RS17260 (SH592_17260) fabZ 3548343..3548768 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SH592_RS17265 (SH592_17265) - 3548964..3550028 (+) 1065 WP_040238774.1 tetratricopeptide repeat protein -
  SH592_RS17270 (SH592_17270) - 3550046..3550867 (-) 822 WP_040238988.1 flagellar hook-basal body protein -
  SH592_RS17275 (SH592_17275) - 3550892..3551689 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12573.46 Da        Isoelectric Point: 9.5817

>NTDB_id=907059 SH592_RS17240 WP_039253548.1 3546470..3546811(-) (ssbB) [Bacillus velezensis strain Y-4]
MFNHVMLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTAGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=907059 SH592_RS17240 WP_039253548.1 3546470..3546811(-) (ssbB) [Bacillus velezensis strain Y-4]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGCCGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372