Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   R4Z10_RS19895 Genome accession   NZ_CP137636
Coordinates   3956440..3956823 (-) Length   127 a.a.
NCBI ID   WP_338471007.1    Uniprot ID   -
Organism   Niallia sp. XMNu-256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3951440..3961823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z10_RS19885 (R4Z10_19875) - 3953974..3954984 (+) 1011 WP_338471005.1 DUF1646 family protein -
  R4Z10_RS19890 (R4Z10_19880) - 3956260..3956436 (-) 177 WP_338471006.1 hypothetical protein -
  R4Z10_RS19895 (R4Z10_19885) ssbB 3956440..3956823 (-) 384 WP_338471007.1 single-stranded DNA-binding protein Machinery gene
  R4Z10_RS19900 (R4Z10_19890) - 3957078..3957509 (+) 432 WP_338471008.1 YwpF family protein -
  R4Z10_RS19905 (R4Z10_19895) - 3957696..3958052 (-) 357 WP_338471009.1 hypothetical protein -
  R4Z10_RS19910 (R4Z10_19900) fabZ 3958313..3958747 (-) 435 WP_338471010.1 3-hydroxyacyl-ACP dehydratase FabZ -
  R4Z10_RS19915 (R4Z10_19905) - 3958917..3959171 (-) 255 WP_338471011.1 DNA-directed RNA polymerase subunit beta -
  R4Z10_RS19920 (R4Z10_19910) - 3959187..3960011 (-) 825 WP_338473287.1 flagellar hook-basal body protein -
  R4Z10_RS19925 (R4Z10_19915) - 3960128..3960946 (-) 819 WP_338471012.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14330.41 Da        Isoelectric Point: 9.5798

>NTDB_id=899633 R4Z10_RS19895 WP_338471007.1 3956440..3956823(-) (ssbB) [Niallia sp. XMNu-256]
MMNQVILVGRLTKVPELRITQEGTSVTSVTVAVNRQFRNQQGEINADFVQCTLWKKIAENTAQYCRKGSLVGITGRIQTR
NYENKEGKRVYVTEVVAETIKFLDSRRQSEPADLQMEPIQVAVGKEG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=899633 R4Z10_RS19895 WP_338471007.1 3956440..3956823(-) (ssbB) [Niallia sp. XMNu-256]
ATGATGAATCAAGTGATATTAGTGGGAAGGCTGACAAAAGTCCCGGAATTGCGAATTACGCAAGAAGGGACATCTGTAAC
GAGTGTAACCGTCGCAGTGAATCGGCAATTTCGCAATCAACAAGGAGAAATCAACGCCGATTTTGTGCAATGTACGTTAT
GGAAAAAAATAGCCGAGAACACGGCCCAATATTGCCGGAAAGGCTCATTGGTGGGAATTACCGGCAGGATTCAAACCCGA
AATTATGAAAATAAAGAGGGAAAACGTGTGTATGTAACAGAAGTCGTAGCGGAAACCATCAAATTCCTTGATAGCCGACG
GCAAAGTGAACCTGCAGATCTCCAAATGGAACCAATCCAAGTAGCCGTTGGGAAGGAGGGATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.717

88.976

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

83.465

0.48
  ssb Latilactobacillus sakei subsp. sakei 23K

54.545

86.614

0.472
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.926

85.039

0.433
  ssbA Streptococcus mutans UA159

49.074

85.039

0.417
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.148

85.039

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

48.148

85.039

0.409
  ssbB/cilA Streptococcus pneumoniae Rx1

47.222

85.039

0.402
  ssbB/cilA Streptococcus pneumoniae D39

47.222

85.039

0.402
  ssbB/cilA Streptococcus pneumoniae R6

47.222

85.039

0.402
  ssbB/cilA Streptococcus mitis SK321

47.222

85.039

0.402
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

82.677

0.37