Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | R3O66_RS07285 | Genome accession | NZ_CP137209 |
| Coordinates | 1427210..1428112 (+) | Length | 300 a.a. |
| NCBI ID | WP_058611612.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain 9VPs_Sm2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1422210..1433112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3O66_RS07245 (R3O66_07245) | - | 1422294..1422848 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| R3O66_RS07250 (R3O66_07250) | - | 1422849..1424297 (+) | 1449 | WP_058611615.1 | rhomboid family intramembrane serine protease | - |
| R3O66_RS07255 (R3O66_07255) | - | 1424302..1424493 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| R3O66_RS07260 (R3O66_07260) | - | 1424490..1425461 (+) | 972 | WP_025904167.1 | ROK family glucokinase | - |
| R3O66_RS07265 (R3O66_07265) | - | 1425461..1425775 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| R3O66_RS07270 (R3O66_07270) | - | 1425805..1426044 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| R3O66_RS07275 (R3O66_07275) | - | 1426142..1426774 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| R3O66_RS07280 (R3O66_07280) | - | 1426808..1427056 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| R3O66_RS07285 (R3O66_07285) | comGA | 1427210..1428112 (+) | 903 | WP_058611612.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| R3O66_RS07290 (R3O66_07290) | comGB | 1428102..1429142 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| R3O66_RS07295 (R3O66_07295) | comGC | 1429157..1429474 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| R3O66_RS07300 (R3O66_07300) | comGD | 1429455..1429901 (+) | 447 | WP_227531649.1 | competence type IV pilus minor pilin ComGD | - |
| R3O66_RS07305 (R3O66_07305) | comGE | 1429885..1430166 (+) | 282 | WP_058611610.1 | competence type IV pilus minor pilin ComGE | - |
| R3O66_RS07310 (R3O66_07310) | - | 1430141..1430575 (+) | 435 | WP_049318781.1 | competence type IV pilus minor pilin ComGF | - |
| R3O66_RS07315 (R3O66_07315) | - | 1430810..1431298 (+) | 489 | WP_058611609.1 | shikimate kinase | - |
| R3O66_RS07320 (R3O66_07320) | gcvT | 1431491..1432579 (+) | 1089 | WP_058611608.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34405.30 Da Isoelectric Point: 6.1198
>NTDB_id=896895 R3O66_RS07285 WP_058611612.1 1427210..1428112(+) (comGA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=896895 R3O66_RS07285 WP_058611612.1 1427210..1428112(+) (comGA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.143 |
93.333 |
0.487 |
| comGA | Staphylococcus aureus N315 |
52.143 |
93.333 |
0.487 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |