Detailed information NTG0896460

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABD372_RS05500
• Genome accession: NZ_CP155528
• Coordinates: 1129742..1130734 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 3-72
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1124742..1135734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABD372_RS05470 (ABD372_05475)	ispD	1124803..1125513 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABD372_RS05475 (ABD372_05480)	ispF	1125513..1125992 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABD372_RS05480 (ABD372_05485)	truD	1125989..1127038 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
ABD372_RS05485 (ABD372_05490)	surE	1127019..1127780 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABD372_RS05490 (ABD372_05495)	pcm	1127774..1128400 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ABD372_RS05495 (ABD372_05500)	nlpD	1128585..1129679 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABD372_RS05500 (ABD372_05505)	rpoS	1129742..1130734 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABD372_RS05505 (ABD372_05510)	-	1130912..1131463 (-)	552	WP_001179442.1	flavodoxin family protein	-
ABD372_RS05510 (ABD372_05515)	-	1131688..1132731 (+)	1044	WP_033559140.1	MBL fold metallo-hydrolase	-
ABD372_RS05515 (ABD372_05520)	ygbN	1132874..1134238 (-)	1365	WP_021531526.1	GntP family transporter	-
ABD372_RS05520 (ABD372_05525)	ygbM	1134327..1135103 (-)	777	WP_001136911.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=896460 ABD372_RS05500 WP_000081550.1 1129742..1130734(+) (rpoS) [Escherichia coli strain 3-72]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=896460 ABD372_RS05500 WP_000081550.1 1129742..1130734(+) (rpoS) [Escherichia coli strain 3-72]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715