Detailed information NTG0895424

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R4708_RS07420
• Genome accession: NZ_CP137104
• Coordinates: 1442562..1442957 (+)
• Length: 131 a.a.
• NCBI ID: WP_000282442.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain LM
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1437562..1447957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4708_RS07370	-	1437644..1438006 (+)	363	WP_000078804.1	DUF2200 domain-containing protein	-
R4708_RS07375	-	1438003..1438506 (+)	504	WP_000800942.1	phosphatase PAP2 family protein	-
R4708_RS07380	-	1438620..1439066 (+)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
R4708_RS07385	-	1439071..1439745 (+)	675	WP_000725707.1	LiaF transmembrane domain-containing protein	-
R4708_RS07390	-	1439988..1440185 (+)	198	Protein_1435	N-acetylmuramoyl-L-alanine amidase family protein	-
R4708_RS07395	-	1440210..1440341 (-)	132	WP_001811306.1	hypothetical protein	-
R4708_RS07400	-	1440435..1440734 (+)	300	WP_001815024.1	DUF4651 domain-containing protein	-
R4708_RS07405	-	1440731..1441048 (+)	318	WP_000615767.1	thioredoxin family protein	-
R4708_RS07410	ytpR	1441064..1441690 (+)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
R4708_RS07415	-	1441723..1442484 (+)	762	WP_001107762.1	SDR family NAD(P)-dependent oxidoreductase	-
R4708_RS07420	ssbB/cilA	1442562..1442957 (+)	396	WP_000282442.1	single-stranded DNA-binding protein	Machinery gene
R4708_RS07425	groES	1443113..1443397 (+)	285	WP_000917339.1	co-chaperone GroES	-
R4708_RS07430	groL	1443413..1445035 (+)	1623	WP_000031573.1	chaperonin GroEL	-
R4708_RS07435	-	1445173..1445928 (+)	756	Protein_1444	epoxyqueuosine reductase QueH	-
R4708_RS07440	-	1446376..1447149 (+)	774	WP_000566040.1	class I SAM-dependent methyltransferase	-
R4708_RS07445	-	1447162..1447494 (+)	333	WP_001810556.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14907.85 Da
• Isoelectric Point: 5.9409

>NTDB_id=895424 R4708_RS07420 WP_000282442.1 1442562..1442957(+) (ssbB/cilA) [Streptococcus pneumoniae strain LM]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=895424 R4708_RS07420 WP_000282442.1 1442562..1442957(+) (ssbB/cilA) [Streptococcus pneumoniae strain LM]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae D39	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae R6	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	99.237	100	0.992
ssbB/cilA	Streptococcus mitis NCTC 12261	97.71	100	0.977
ssbA	Streptococcus mutans UA159	75.573	100	0.756
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.992	100	0.71
ssbB	Lactococcus lactis subsp. cremoris KW2	60.714	85.496	0.519
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.887	80.916	0.42
ssb	Latilactobacillus sakei subsp. sakei 23K	47.788	86.26	0.412
ssbB	Bacillus subtilis subsp. subtilis str. 168	44.444	82.443	0.366