Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   R3L13_RS11910 Genome accession   NZ_CP137055
Coordinates   2480784..2481110 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2475784..2486110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS11885 (R3L13_11905) hemC 2476280..2477197 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  R3L13_RS11890 (R3L13_11910) - 2477202..2477969 (+) 768 WP_049590754.1 uroporphyrinogen-III synthase -
  R3L13_RS11895 (R3L13_11915) - 2477978..2478817 (+) 840 WP_049590753.1 hypothetical protein -
  R3L13_RS11900 (R3L13_11920) - 2478827..2480020 (+) 1194 WP_032039913.1 membrane protein -
  R3L13_RS11905 (R3L13_11925) - 2480027..2480467 (+) 441 WP_188198474.1 thioesterase family protein -
  R3L13_RS11910 (R3L13_11930) hns 2480784..2481110 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  R3L13_RS11915 (R3L13_11935) gspN 2481442..2482185 (+) 744 WP_000730343.1 type II secretion system protein N -
  R3L13_RS11920 (R3L13_11940) - 2482185..2483021 (+) 837 WP_000870031.1 type II secretion system protein N -
  R3L13_RS11925 (R3L13_11945) gspD 2483063..2485339 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  R3L13_RS11930 (R3L13_11950) - 2485380..2486009 (+) 630 WP_000219972.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=894434 R3L13_RS11910 WP_000801427.1 2480784..2481110(+) (hns) [Acinetobacter baumannii strain SNUBHAB0137]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=894434 R3L13_RS11910 WP_000801427.1 2480784..2481110(+) (hns) [Acinetobacter baumannii strain SNUBHAB0137]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1