Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU34_RS00250 Genome accession   NZ_AP024911
Coordinates   50704..51819 (+) Length   371 a.a.
NCBI ID   WP_123017264.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 45704..56819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS00230 trkA 46191..47567 (-) 1377 WP_123015056.1 Trk system potassium transporter TrkA -
  OCU34_RS00235 rsmB 47625..48905 (-) 1281 WP_123015057.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU34_RS00240 fmt 48952..49899 (-) 948 WP_123015058.1 methionyl-tRNA formyltransferase -
  OCU34_RS00245 def 49913..50431 (-) 519 WP_123015059.1 peptide deformylase -
  OCU34_RS00250 dprA 50704..51819 (+) 1116 WP_123017264.1 DNA-processing protein DprA Machinery gene
  OCU34_RS00255 - 51825..52298 (+) 474 WP_199287092.1 DUF494 family protein -
  OCU34_RS00260 - 52313..52891 (+) 579 WP_123015061.1 type I DNA topoisomerase -
  OCU34_RS00265 - 52944..54077 (-) 1134 WP_123015062.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU34_RS00270 purE 54081..54566 (-) 486 WP_123015063.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU34_RS00275 - 54754..55311 (+) 558 WP_123015064.1 Sua5/YciO/YrdC/YwlC family protein -
  OCU34_RS00280 hemF 55346..56260 (+) 915 WP_123015065.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40305.96 Da        Isoelectric Point: 6.7805

>NTDB_id=89391 OCU34_RS00250 WP_123017264.1 50704..51819(+) (dprA) [Vibrio zhugei strain KCTC 62784]
MQEEVLMAWLMLSFVPRLGPKRLARLLSIDAPHHLVQYSPQQWQAVGLKADQIDYLTQHAHQQVNECLAWQAASAQRHII
TPLHSTYPPLLKSISAAPSVLFVEGDPQCLTEPQVAMVGSRNASVDGQKSAYQFAEELAHHGMTITSGLALGIDGHAHDG
ALAGGGKTIAVLGSGLAQVYPARHRRLASRIIERGALVSEFCPQTPPKAVHFPRRNRIISGLSLGVLVVEAALKSGSLIT
ARYATEQDRDVFVLPGSIYQANHSGSNDLIRQGASLVQNASQILEELTTFVNWALTEQKTRQQALFSPPESEEQLPFPEL
FANVGEEATPVDILASRTNIPVHEVMTQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=89391 OCU34_RS00250 WP_123017264.1 50704..51819(+) (dprA) [Vibrio zhugei strain KCTC 62784]
TTGCAAGAAGAAGTGCTTATGGCTTGGTTAATGTTGAGTTTTGTCCCACGCTTAGGGCCAAAACGTTTGGCGCGGTTATT
GAGTATCGATGCCCCGCATCATTTGGTGCAGTATTCTCCGCAACAGTGGCAAGCGGTAGGCTTAAAAGCGGATCAAATTG
ACTATTTAACCCAACATGCACATCAACAAGTGAATGAATGCTTAGCATGGCAAGCAGCTTCAGCGCAGCGACATATCATT
ACACCTCTGCATTCAACCTATCCTCCGTTGCTCAAATCCATCTCTGCGGCGCCAAGTGTTTTGTTTGTGGAAGGCGATCC
ACAATGCTTAACAGAACCACAAGTGGCCATGGTTGGCAGCCGTAACGCTTCTGTTGATGGACAAAAATCGGCTTATCAAT
TTGCCGAGGAGTTAGCGCACCATGGCATGACGATAACCAGTGGCTTAGCGTTGGGGATTGATGGGCATGCCCATGACGGC
GCGTTAGCAGGAGGTGGCAAAACCATCGCGGTATTGGGTAGCGGCCTCGCGCAAGTTTATCCTGCCCGCCACCGACGCTT
AGCCTCTCGCATCATCGAGCGTGGAGCATTGGTGTCCGAGTTTTGTCCACAAACCCCTCCGAAAGCGGTGCACTTTCCTC
GACGAAATCGCATTATCAGTGGCTTATCGCTCGGTGTCTTAGTGGTAGAAGCGGCGCTGAAAAGTGGCTCGTTAATTACT
GCGCGTTATGCGACAGAGCAAGATCGTGATGTCTTTGTGTTGCCTGGATCGATTTATCAAGCCAACCATAGTGGGAGTAA
TGATTTAATTCGCCAAGGGGCGAGTTTGGTACAAAATGCCTCGCAGATCCTCGAAGAATTAACGACGTTTGTAAATTGGG
CGCTTACTGAGCAAAAAACAAGGCAGCAAGCACTTTTTTCTCCGCCTGAGAGTGAAGAACAATTGCCATTTCCTGAGCTC
TTCGCTAACGTAGGAGAAGAGGCCACCCCGGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAC
GCAGCTTTTAGAGCTTGAACTCTCTGGGCACGTTGTTGCGGTATCTGGTGGTTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(308-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

62.803

100

0.628
  dprA Vibrio campbellii strain DS40M4

63.115

98.652

0.623
  dprA Glaesserella parasuis strain SC1401

45.968

100

0.461
  dprA Legionella pneumophila strain ERS1305867

44.011

96.765

0.426
  dprA Haemophilus influenzae Rd KW20

43.605

92.722

0.404
  dprA Acinetobacter baylyi ADP1

42.229

91.914

0.388
  dprA Acinetobacter baumannii D1279779

43.636

88.949

0.388
  dprA Acinetobacter baumannii strain A118

43.03

88.949

0.383
  dprA Neisseria gonorrhoeae MS11

34.509

100

0.369
  dprA Neisseria meningitidis strain C311

34.257

100

0.367
  dprA Neisseria meningitidis MC58

34.257

100

0.367
  dprA Neisseria gonorrhoeae strain FA1090

34.005

100

0.364

Multiple sequence alignment