Detailed information NTG0893196

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R1Y14_RS00120
• Genome accession: NZ_CP136899
• Coordinates: 14382..14777 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282442.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain ST62
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 9382..19777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1Y14_RS00095 (R1Y14_00095)	-	9731..10063 (-)	333	WP_001810556.1	helix-turn-helix transcriptional regulator	-
R1Y14_RS00100 (R1Y14_00100)	-	10076..10849 (-)	774	WP_000566040.1	class I SAM-dependent methyltransferase	-
R1Y14_RS00105 (R1Y14_00105)	-	11297..12052 (-)	756	Protein_6	epoxyqueuosine reductase QueH	-
R1Y14_RS00110 (R1Y14_00110)	groL	12190..13812 (-)	1623	WP_000031573.1	chaperonin GroEL	-
R1Y14_RS00115 (R1Y14_00115)	groES	13828..14112 (-)	285	WP_000917313.1	co-chaperone GroES	-
R1Y14_RS00120 (R1Y14_00120)	ssbB/cilA	14382..14777 (-)	396	WP_000282442.1	single-stranded DNA-binding protein	Machinery gene
R1Y14_RS00125 (R1Y14_00125)	-	14855..15616 (-)	762	WP_001107767.1	SDR family NAD(P)-dependent oxidoreductase	-
R1Y14_RS00130 (R1Y14_00130)	ytpR	15649..16275 (-)	627	WP_000578318.1	YtpR family tRNA-binding protein	-
R1Y14_RS00135 (R1Y14_00135)	-	16291..16608 (-)	318	WP_000615769.1	thioredoxin family protein	-
R1Y14_RS00140 (R1Y14_00140)	-	16605..16904 (-)	300	WP_001013976.1	DUF4651 domain-containing protein	-
R1Y14_RS00145 (R1Y14_00145)	-	17102..17182 (-)	81	WP_223200463.1	hypothetical protein	-
R1Y14_RS00150 (R1Y14_00150)	-	17189..17380 (-)	192	WP_000291826.1	cell wall-binding protein	-
R1Y14_RS00155 (R1Y14_00155)	-	17541..18215 (-)	675	WP_000725745.1	LiaF transmembrane domain-containing protein	-
R1Y14_RS00160 (R1Y14_00160)	-	18221..18667 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
R1Y14_RS00165 (R1Y14_00165)	-	18769..19284 (-)	516	WP_000800937.1	phosphatase PAP2 family protein	-
R1Y14_RS00170 (R1Y14_00170)	-	19281..19643 (-)	363	WP_000078808.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14907.85 Da
• Isoelectric Point: 5.9409

>NTDB_id=893196 R1Y14_RS00120 WP_000282442.1 14382..14777(-) (ssbB/cilA) [Streptococcus pneumoniae strain ST62]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=893196 R1Y14_RS00120 WP_000282442.1 14382..14777(-) (ssbB/cilA) [Streptococcus pneumoniae strain ST62]
ATGTATAATAAAGTTATCTTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae D39	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae R6	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	99.237	100	0.992
ssbB/cilA	Streptococcus mitis NCTC 12261	97.71	100	0.977
ssbA	Streptococcus mutans UA159	75.573	100	0.756
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.992	100	0.71
ssbB	Lactococcus lactis subsp. cremoris KW2	60.714	85.496	0.519
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.887	80.916	0.42
ssb	Latilactobacillus sakei subsp. sakei 23K	47.788	86.26	0.412
ssbB	Bacillus subtilis subsp. subtilis str. 168	44.444	82.443	0.366