Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV11_RS00255 Genome accession   NZ_AP024895
Coordinates   51089..52204 (+) Length   371 a.a.
NCBI ID   WP_261896329.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 46089..57204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS00235 trkA 46589..47965 (-) 1377 WP_261894219.1 Trk system potassium transporter TrkA -
  OCV11_RS00240 rsmB 48024..49304 (-) 1281 WP_261894221.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCV11_RS00245 fmt 49356..50303 (-) 948 WP_261894222.1 methionyl-tRNA formyltransferase -
  OCV11_RS00250 def 50322..50831 (-) 510 WP_261894224.1 peptide deformylase -
  OCV11_RS00255 dprA 51089..52204 (+) 1116 WP_261896329.1 DNA-processing protein DprA Machinery gene
  OCV11_RS00260 - 52207..52683 (+) 477 WP_315972740.1 DUF494 family protein -
  OCV11_RS00265 - 52699..53274 (+) 576 WP_261894225.1 type I DNA topoisomerase -
  OCV11_RS00270 - 53383..54516 (-) 1134 WP_261894227.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV11_RS00275 purE 54520..55005 (-) 486 WP_261894229.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV11_RS00280 - 55204..55761 (+) 558 WP_261894230.1 L-threonylcarbamoyladenylate synthase -
  OCV11_RS00285 hemF 55819..56733 (+) 915 WP_261894231.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40742.72 Da        Isoelectric Point: 6.2352

>NTDB_id=89238 OCV11_RS00255 WP_261896329.1 51089..52204(+) (dprA) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MQDESLRAWMALSFTPRLGMKNLSRLLSHDAPEKLLSYSSIQWQALGLKDDQIRYLQSQAIREAELCLEWQQANALRTIL
IPQHPLYPPLLKEIAAAPPVLFVEGDVQCLSLPQIAIVGSRNATIDGQRAAHQFARELVEQGMVITSGLALGIDGYAHDG
ALTVQGKTIAVLGSGFDHLYPARHRQLAERIRHSGALVSEFRPDTKPRAEHFPRRNRIVSGLSLGVLVVEAALKSGSLIT
ARYATEQDREVFVLPGTIYQSNYAGSNELIRQGACLVQNVAQILEELGAMLDWSINQQNLAQPTLFSPLNDEEQLPFPLL
LANVGVEATPVDILASRTNIPVQDVMTQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=89238 OCV11_RS00255 WP_261896329.1 51089..52204(+) (dprA) [Vibrio porteresiae DSM 19223 strain MSSRF30]
GTGCAAGATGAATCATTACGAGCGTGGATGGCGCTAAGTTTTACGCCTCGCTTGGGGATGAAAAACTTATCGCGACTATT
AAGTCATGATGCGCCTGAAAAGCTGTTGTCCTACTCAAGTATTCAGTGGCAGGCGTTAGGTCTTAAAGATGATCAAATCC
GCTATTTGCAATCACAAGCGATACGTGAAGCTGAGCTCTGTCTAGAGTGGCAGCAAGCGAATGCGCTGAGAACGATTTTG
ATACCGCAACACCCTTTATATCCTCCTTTATTAAAAGAAATTGCCGCTGCACCGCCAGTACTGTTTGTTGAAGGTGATGT
TCAATGCTTATCTCTGCCTCAAATTGCCATTGTTGGCAGTCGTAATGCGACTATTGATGGTCAGCGTGCGGCGCACCAGT
TCGCTCGCGAGTTGGTCGAGCAAGGGATGGTGATTACCAGTGGGTTAGCTTTAGGTATTGATGGCTATGCCCATGATGGT
GCTCTCACGGTACAAGGGAAGACAATCGCAGTACTCGGCTCGGGCTTTGATCATCTCTATCCTGCTCGTCATCGCCAATT
AGCGGAGCGTATTCGACACTCAGGAGCTTTAGTCTCTGAGTTTCGCCCTGATACCAAACCAAGAGCAGAACACTTTCCGC
GGCGCAATCGTATTGTTAGCGGTTTGTCGTTAGGGGTGCTGGTGGTAGAAGCGGCATTAAAGAGTGGCTCTTTGATTACT
GCTCGATATGCCACGGAGCAAGACCGAGAAGTGTTTGTGCTGCCAGGGACGATTTATCAGTCCAATTATGCAGGCAGTAA
CGAGCTAATTCGCCAAGGTGCATGTTTAGTGCAAAACGTGGCTCAGATCCTTGAAGAGTTAGGTGCAATGCTGGATTGGT
CGATTAATCAGCAGAACTTGGCTCAGCCAACACTTTTTTCTCCCCTAAATGACGAAGAACAATTGCCATTTCCCCTGCTG
TTAGCTAACGTAGGAGTAGAAGCCACACCAGTTGATATTCTTGCAAGCCGGACCAATATACCCGTGCAAGATGTCATGAC
ACAGCTTTTAGAGCTAGAGCTCTCAGGGCATGTGGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(320-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

63.612

100

0.636
  dprA Vibrio campbellii strain DS40M4

62.703

99.73

0.625
  dprA Glaesserella parasuis strain SC1401

44.624

100

0.447
  dprA Neisseria meningitidis MC58

38.213

100

0.415
  dprA Neisseria meningitidis strain C311

38.213

100

0.415
  dprA Acinetobacter baylyi ADP1

39.947

100

0.407
  dprA Haemophilus influenzae Rd KW20

44.51

90.836

0.404
  dprA Neisseria gonorrhoeae strain FA1090

36.79

100

0.402
  dprA Neisseria gonorrhoeae MS11

36.881

100

0.402
  dprA Acinetobacter baumannii strain A118

42.478

91.375

0.388
  dprA Legionella pneumophila strain ERS1305867

47

80.863

0.38
  dprA Acinetobacter baumannii D1279779

41.246

90.836

0.375

Multiple sequence alignment