Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RAS18_RS18050 Genome accession   NZ_CP136635
Coordinates   3601454..3601795 (-) Length   113 a.a.
NCBI ID   WP_106044689.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3596454..3606795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS18035 - 3596691..3599465 (+) 2775 WP_150224591.1 DEAD/DEAH box helicase -
  RAS18_RS18040 - 3599588..3600445 (-) 858 WP_406621010.1 Cof-type HAD-IIB family hydrolase -
  RAS18_RS18045 - 3600451..3601227 (-) 777 WP_061570962.1 DeoR/GlpR family DNA-binding transcription regulator -
  RAS18_RS18050 ssbB 3601454..3601795 (-) 342 WP_106044689.1 single-stranded DNA-binding protein SsbB Machinery gene
  RAS18_RS18055 - 3601873..3602256 (-) 384 WP_106044688.1 hypothetical protein -
  RAS18_RS18060 - 3602431..3602841 (+) 411 WP_061570879.1 YwpF-like family protein -
  RAS18_RS18065 - 3603107..3603763 (-) 657 WP_406621011.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12502.19 Da        Isoelectric Point: 8.4667

>NTDB_id=892065 RAS18_RS18050 WP_106044689.1 3601454..3601795(-) (ssbB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGISGRIQTR
SYENAEGAKVYVTEVMADTVRFMDSKAREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=892065 RAS18_RS18050 WP_106044689.1 3601454..3601795(-) (ssbB) [Bacillus atrophaeus subsp. globigii strain Hab-5]
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATTGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCGGATTACGTCAATTGTACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGCCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

90.265

100

0.903
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

93.805

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.148

95.575

0.46
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbA Streptococcus mutans UA159

43.519

95.575

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.509

93.805

0.389