Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU30_RS00210 Genome accession   NZ_AP024887
Coordinates   43075..44190 (+) Length   371 a.a.
NCBI ID   WP_077315267.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 38075..49190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS00190 trkA 38561..39937 (-) 1377 WP_077315215.1 Trk system potassium transporter TrkA -
  OCU30_RS00195 rsmB 39995..41275 (-) 1281 WP_077315214.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU30_RS00200 fmt 41322..42269 (-) 948 WP_077315213.1 methionyl-tRNA formyltransferase -
  OCU30_RS00205 def 42286..42801 (-) 516 WP_077315212.1 peptide deformylase -
  OCU30_RS00210 dprA 43075..44190 (+) 1116 WP_077315267.1 DNA-processing protein DprA Machinery gene
  OCU30_RS00215 - 44196..44669 (+) 474 WP_205408834.1 DUF494 family protein -
  OCU30_RS00220 - 44684..45271 (+) 588 WP_077315210.1 type I DNA topoisomerase -
  OCU30_RS00225 - 45323..46456 (-) 1134 WP_077315209.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU30_RS00230 purE 46460..46945 (-) 486 WP_077315208.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU30_RS00235 - 47132..47689 (+) 558 WP_077315207.1 Sua5/YciO/YrdC/YwlC family protein -
  OCU30_RS00240 hemF 47721..48635 (+) 915 WP_077315206.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40084.67 Da        Isoelectric Point: 7.1923

>NTDB_id=89129 OCU30_RS00210 WP_077315267.1 43075..44190(+) (dprA) [Vibrio palustris strain CECT 9027]
MQEEVLTAWLTLSFVPRLGPKRLARLLSIDSPDNLLRYSAAQWLAIGLKPDQVRFITQHAPRQVEACLAWQSAASNRHII
TPLHSDYPALLKPISAAPSVLFVEGHRQSLAHPQLAMVGSRNASIDGQKAAYQFAKELSEHRITVTSGLALGIDGHAHDG
ALAGGGNTIAVLGSGLAQIYPARHRRLAARIVESGALVSEFAPHTPPKAAHFPRRNRIISGLSLGVLVVEAAIKSGSLIT
ARYATEQDRDVFVLPGSIYQANHGGSNDLIRQGASLVQTVPQILEELNTFVNWSLNEQETRQPGLFSSPESEEQLPFPEL
LANVGEEATPVDILASRTNIPVHEVMTQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=89129 OCU30_RS00210 WP_077315267.1 43075..44190(+) (dprA) [Vibrio palustris strain CECT 9027]
TTGCAAGAAGAAGTACTAACGGCTTGGTTAACACTAAGCTTTGTCCCACGTTTGGGCCCTAAACGTTTAGCCCGTTTATT
GAGTATTGATTCCCCTGATAACTTGCTACGCTATTCTGCGGCGCAGTGGTTGGCAATAGGCTTAAAACCGGATCAAGTTC
GCTTCATTACACAGCATGCTCCTCGACAAGTTGAAGCATGCTTGGCATGGCAGTCTGCAGCTTCTAACCGACATATCATT
ACCCCTTTGCATAGTGATTACCCTGCATTACTTAAACCGATTTCGGCAGCGCCAAGCGTGTTGTTCGTTGAAGGACACAG
GCAGAGTCTCGCTCACCCGCAGTTAGCGATGGTCGGCAGTCGTAATGCGTCTATCGATGGGCAAAAGGCCGCGTATCAAT
TTGCTAAAGAATTATCGGAACATCGTATTACCGTGACCAGTGGTTTAGCGTTAGGAATTGATGGCCATGCTCATGATGGG
GCGTTAGCTGGTGGCGGTAATACAATTGCGGTATTAGGGAGTGGCTTAGCGCAAATATATCCTGCACGTCATCGCCGTTT
GGCGGCACGTATTGTCGAATCTGGAGCATTAGTGTCTGAGTTTGCGCCACATACCCCACCTAAGGCGGCGCATTTTCCAC
GCCGTAATCGTATTATCAGTGGTTTATCATTGGGTGTGTTAGTGGTTGAAGCGGCCATAAAAAGCGGTTCGTTGATTACC
GCTCGTTATGCCACAGAGCAAGACCGAGATGTCTTTGTTTTACCTGGCTCGATTTATCAAGCTAATCATGGTGGTAGTAA
TGATCTTATTCGCCAAGGTGCGAGCTTAGTGCAAACCGTTCCGCAAATCCTCGAAGAACTGAATACTTTTGTGAACTGGT
CGCTGAATGAGCAAGAAACACGACAGCCGGGACTTTTTTCCTCACCGGAGAGCGAAGAACAATTGCCATTTCCCGAGCTC
TTAGCTAACGTAGGGGAAGAAGCCACCCCGGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAC
GCAGCTTTTAGAGCTAGAACTCTCTGGGCATGTTGTTGCGGTATCTGGTGGTTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(318-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.151

100

0.642
  dprA Vibrio campbellii strain DS40M4

61.475

98.652

0.606
  dprA Glaesserella parasuis strain SC1401

45.43

100

0.456
  dprA Legionella pneumophila strain ERS1305867

45.125

96.765

0.437
  dprA Haemophilus influenzae Rd KW20

43.44

92.453

0.402
  dprA Acinetobacter baumannii D1279779

42.941

91.644

0.394
  dprA Acinetobacter baumannii strain A118

42.647

91.644

0.391
  dprA Neisseria meningitidis strain C311

35.194

100

0.391
  dprA Neisseria meningitidis MC58

35.194

100

0.391
  dprA Acinetobacter baylyi ADP1

41.716

91.105

0.38
  dprA Neisseria gonorrhoeae MS11

35.013

100

0.375
  dprA Neisseria gonorrhoeae strain FA1090

34.761

100

0.372

Multiple sequence alignment