Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RWV42_RS15710 Genome accession   NZ_CP136173
Coordinates   3312632..3313042 (-) Length   136 a.a.
NCBI ID   WP_002067305.1    Uniprot ID   A0A333UQE7
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3307632..3318042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS15680 (RWV42_15680) - 3307718..3307987 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RWV42_RS15685 (RWV42_15685) rapZ 3307984..3308835 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RWV42_RS15690 (RWV42_15690) panC 3308858..3309706 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RWV42_RS15695 (RWV42_15695) panB 3309710..3310519 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RWV42_RS15700 (RWV42_15700) folK 3310565..3311047 (-) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RWV42_RS15705 (RWV42_15705) pcnB 3311044..3312507 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RWV42_RS15710 (RWV42_15710) comEA 3312632..3313042 (-) 411 WP_002067305.1 ComEA family DNA-binding protein Machinery gene
  RWV42_RS15715 (RWV42_15715) mazG 3313011..3313817 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  RWV42_RS15720 (RWV42_15720) - 3313929..3314702 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RWV42_RS15725 (RWV42_15725) - 3314747..3317053 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.96 Da        Isoelectric Point: 10.4475

>NTDB_id=889386 RWV42_RS15710 WP_002067305.1 3312632..3313042(-) (comEA) [Acinetobacter baumannii strain ABO21-A049]
MQYSMRFWKNKYFLLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=889386 RWV42_RS15710 WP_002067305.1 3312632..3313042(-) (comEA) [Acinetobacter baumannii strain ABO21-A049]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A333UQE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412