Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   RMQ62_RS05025 Genome accession   NZ_CP135065
Coordinates   1056044..1056994 (-) Length   316 a.a.
NCBI ID   WP_313741731.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051044..1061994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS04985 (RMQ62_04985) - 1051103..1052290 (-) 1188 WP_044680792.1 acetate kinase -
  RMQ62_RS04990 (RMQ62_04990) comYH 1052340..1053293 (-) 954 WP_024401509.1 class I SAM-dependent methyltransferase Machinery gene
  RMQ62_RS04995 (RMQ62_04995) comGG 1053350..1053760 (-) 411 WP_024401508.1 competence type IV pilus minor pilin ComGG -
  RMQ62_RS05000 (RMQ62_05000) comGF/cglF 1053738..1054172 (-) 435 WP_024389483.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMQ62_RS05005 (RMQ62_05005) comYE 1054159..1054452 (-) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMQ62_RS05010 (RMQ62_05010) comGD 1054424..1054831 (-) 408 WP_074391329.1 competence type IV pilus minor pilin ComGD -
  RMQ62_RS05015 (RMQ62_05015) comYC 1054812..1055093 (-) 282 WP_074391328.1 competence type IV pilus major pilin ComGC Machinery gene
  RMQ62_RS05020 (RMQ62_05020) comYB 1055095..1056132 (-) 1038 WP_269472402.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMQ62_RS05025 (RMQ62_05025) comYA 1056044..1056994 (-) 951 WP_313741731.1 competence type IV pilus ATPase ComGA Machinery gene
  RMQ62_RS05030 (RMQ62_05030) - 1057080..1058030 (+) 951 WP_313741732.1 LD-carboxypeptidase -
  RMQ62_RS05035 (RMQ62_05035) - 1058065..1058430 (-) 366 WP_024395451.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35413.23 Da        Isoelectric Point: 5.6938

>NTDB_id=884725 RMQ62_RS05025 WP_313741731.1 1056044..1056994(-) (comYA) [Streptococcus suis strain ID24665]
MIQEKARKMIEEAVADRVSDIYLVPRGQGYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIAFGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=884725 RMQ62_RS05025 WP_313741731.1 1056044..1056994(-) (comYA) [Streptococcus suis strain ID24665]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCAGATAGGGTCAGTGATATTTATCTGGTTCCTCGTGG
TCAAGGCTACCAAGTCTATCATCGTATCATGGACGAGCGGGAATTTGTGCAAGACTTAGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTCTTAGCAGGTTTAAATGTCGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGTGATTATCGTGGTAAGGAAAGTTTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGACTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAACAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGCCATCGACCAGACTTGCTCATCATCGGAGAGATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGTCTGACGGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCAGGAGTCTAT
GCCCGTATGTTAGAACTAGGTGTCAGCCCTGAGGAGTTAAATAATGCCCTTCAAGGCATTGCCTATCAACGTTTGATTGG
GGGAGGAGGTGTAGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCTTTGGATCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.064

98.734

0.642
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.064

98.734

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.064

98.734

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.064

98.734

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.064

98.734

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.839

98.101

0.636
  comGA Lactococcus lactis subsp. cremoris KW2

53.312

100

0.535
  comGA Latilactobacillus sakei subsp. sakei 23K

41.516

87.658

0.364